[BioC] error in SRAdb

[Dan Tenenbaum]

CC'ing the maintainer of SRAdb.
Dan


----- Original Message -----
> From: "Robert Faryabi (NIH/NCI) [F]" <Babak.Faryabi at nih.gov>
> To: bioconductor at r-project.org
> Sent: Monday, July 21, 2014 9:45:34 AM
> Subject: [BioC] error in SRAdb
> 
> Hello list,
> 
> I'm having problem with SRAdb package. Any suggestion is appreciated.
> I'm getting the following error after trying to update my sqlite file
> using getSRAdbFile() command.
> 
> > getSRAdbFile()
> trying URL 'http://dl.dropbox.com/u/51653511/SRAmetadb.sqlite.gz'
> Error in download.file(url_sra, destfile = localfile, mode = "wb",
> method = method) :
>   cannot open URL
>   'http://dl.dropbox.com/u/51653511/SRAmetadb.sqlite.gz'
> 
> > sessionInfo()
> R version 3.1.0 (2014-04-10)
> Platform: x86_64-unknown-linux-gnu (64-bit)
> 
> locale:
> [1] C
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] SRAdb_1.18.0   RCurl_1.95-4.1 bitops_1.0-6   graph_1.42.0
>   RSQLite_0.11.4
> [6] DBI_0.2-7
> 
> loaded via a namespace (and not attached):
> [1] Biobase_2.24.0      BiocGenerics_0.10.0 GEOquery_2.30.1
> [4] XML_3.98-1.1        parallel_3.1.0      stats4_3.1.0
> [7] tools_3.1.0
> 
> Best,
> Robert
> 
> Robert Babak Faryabi, PhD
> 
> Laboratory of Genome Integrity
> NCI/NIH
> Building 37, Room 1108
> 37 Convent Drive
> Bethesda, MD 20892
> Tel: (301)594-6485
> Fax: (301)402-0711
> URL: http://ccr.cancer.gov/labs/lab.asp?labid=920
> 
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