[BioC] XPS crash while importing exon scheme

[Nhu Quynh T. Tran]

Dear Christian,

So, I downloaded the root_v5.34.05.source.tar.gz and did the whole installation again.  At the end it said ROOT BUILD SUCCESSFUL, but when I typed "root" after doing ". bin/thisroot.sh" and "source bin/thisroot.sh", NOTHING HAPPENED. I could not quit when typing ".q".  I had to do Ctr-Z.

Do you know what is wrong?

Below are the 5 warnings that were generated during the installation:

In file included from cint/cint/lib/dll_stl/rootcint_set.h:18:
include/G__ci.h:971:7: warning: private field 'type' is not used [-Wunused-private-field]
  int type;
      ^
include/G__ci.h:972:7: warning: private field 'tagnum' is not used [-Wunused-private-field]
  int tagnum;
      ^
include/G__ci.h:973:7: warning: private field 'typenum' is not used [-Wunused-private-field]
  int typenum;
      ^
include/G__ci.h:975:19: warning: private field 'isconst' is not used [-Wunused-private-field]
  G__SIGNEDCHAR_T isconst;
                  ^
include/G__ci.h:977:29: warning: private field 'dummyForCint7' is not used [-Wunused-private-field]
  struct G__DUMMY_FOR_CINT7 dummyForCint7;
                            ^
5 warnings generated.

Quynh

On Jul 24, 2014, at 3:19 PM, cstrato wrote:

> Dear Quynh,
> 
> You could simply delete the root folder, however, what I usually do is to simply rename the folder to e.g. 'root_v53419. In this way I can keep different versions of root and rename the current version to 'root'.
> 
> Best regards,
> Christian
> 
> On 7/24/14 10:10 PM, Nhu Quynh T. Tran wrote:
>> Dear Christian,
>> 
>> I think I should uninstall the current vernon of root before installing the v5.34.05, correct?.  How do I do that?  Just delete the root folder?
>> 
>> Thanks,
>> Quynh
>> 
>> On Jul 24, 2014, at 2:36 PM, cstrato wrote:
>> 
>>> Dear Quynh,
>>> 
>>> You still need root_v5.34.05, but this time from:
>>> ftp://root.cern.ch/root/root_v5.34.05.macosx106-x86_64-gcc-4.2.tar.gz
>>> 
>>> Alternatively, if you are willing to compile xps then you can keep your current version of root. You can download the source file and do e.g.
>>> R CMD INSTALL -l ~/Library/R/3.0/library xps_1.24.0.tar.gz
>>> 
>>> Best regards,
>>> Christian
>>> 
>>> 
>>> On 7/24/14 9:22 PM, Nhu Quynh T. Tran wrote:
>>>> Dear Christian,
>>>> 
>>>> My root file is root_v5.34.19.  I'm using Mac OS X Lion 10.7.5.  What
>>>> should be the right root version to use?
>>>> 
>>>> Thanks,
>>>> Quynh
>>>> 
>>>> 
>>>> On Jul 24, 2014, at 1:46 PM, cstrato wrote:
>>>> 
>>>>> ftp://root.cern.ch/root/root_v5.34.05.macosx64-10.8-i386.tar.gz
>>>> 
>> 
>>