[BioC] Rbowtie - compilation error

Romain [guest] guest at bioconductor.org
Wed Jun 4 09:20:51 CEST 2014


Hi,

I'm trying to install "Rbowtie" package, following the instructions here : http://bioconductor.org/packages/2.12/bioc/html/Rbowtie.html

When I run the command, I got this error message :
http://pastebin.com/DkEdCV05

I'm currently running on Ubuntu 12.4 LTS and all others packages seems to work well. I updated gcc and g++ to the last version aviable. 
May you help me to identify the problem ?

Thanks. 

 -- output of sessionInfo(): 

R version 3.1.0 (2014-04-10)
Platform: i686-pc-linux-gnu (32-bit)

locale:
 [1] LC_CTYPE=fr_FR.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=fr_FR.UTF-8        LC_COLLATE=fr_FR.UTF-8    
 [5] LC_MONETARY=fr_FR.UTF-8    LC_MESSAGES=fr_FR.UTF-8   
 [7] LC_PAPER=fr_FR.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.14.2

loaded via a namespace (and not attached):
[1] tools_3.1.0


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