[BioC] Custom GeneSetCollection PFAM

[Fabian Grammes]

Dear all

I'm working with an unsupported organism. However I have a table 
of PFAM annotations for my genes and would like to make a
GeneSetCollection out of it (to use it later for hypergeometric testing
etc...)

So how would I get a data set like this: 

gene_id	pfam_id
XLOC_000002 PF00354
XLOC_000002 PF13385
XLOC_000005 PF10523
XLOC_000005 PF13385
XLOC_000007 PF00013
XLOC_000007 PF02791
XLOC_000007 PF13385

into a GeneSetCollection ??

Thanks, kind regards

Fabian