[BioC] topGO genes associated with GO terms

[Agnieszka Golicz [guest]]

Hello,

Is it possible to recover a full list of genes associated with a significantly enriched GO term?

I am using custom annotation in the GO2gene format.


Best wishes,
Agnieszka

 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] topGO_2.12.0         SparseM_1.03         GO.db_2.9.0
[4] RSQLite_0.11.4       DBI_0.2-7            AnnotationDbi_1.22.6
[7] Biobase_2.20.1       BiocGenerics_0.6.0   graph_1.38.3

loaded via a namespace (and not attached):
[1] grid_3.0.1      IRanges_1.18.4  lattice_0.20-27 stats4_3.0.1
[5] tools_3.0.1


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