[BioC] GO enrichment analysis for rice genes

Yong Li mail.yong.li at gmail.com
Wed Jun 25 12:14:06 CEST 2014


Dear list members,

from an RNA-seq experiment in rice I got a list of differentially
expressed genes. I wanted to do a GO enrichment analysis of these
genes. The gene IDs are like the following:

LOC_Os09g02000.1
LOC_Os07g06834.1
LOC_Os05g36210.1
LOC_Os01g37000.1
...

However it looks like I cannot simply do it with the commonly used
Bioc packages. Does anyone has an idea how I can proceed? Pointers to
other tools outside Bioconductor are also much appreciated.

Best regards,
Yong



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