[BioC] SomaticSignatures

[Steve Lianoglou]

Hi,

On Sat, Mar 22, 2014 at 2:13 PM, hasif [guest] <guest at bioconductor.org> wrote:
>
> Hi there,
>> I am a Post-doc student started analyzing human genome data few days
>> back. My aim is to find UVA signature mutations. i have done variant
>> calling by GATK and was wondering how i can extract signatures using
>> these call without using much programming (as I am a biologist working
>> in Bioinformatics field). while doing search on web i came
>> across Package â EURO ~SomaticSignaturesâ EURO (tm). i have some questions
>> can you please suggest what can help me in handling this package?
>> My first aim is to use my data and find sequence context of  these variants
>> please suggest me any easy guide to start with

Have you read through the rather extensive looking vignette?

http://www.bioconductor.org/packages/devel/bioc/vignettes/SomaticSignatures/inst/doc/SomaticSignatures-vignette.pdf

-- 
Steve Lianoglou
Computational Biologist
Genentech