[BioC] SomaticSignatures

Steve Lianoglou lianoglou.steve at gene.com
Sat Mar 22 23:52:44 CET 2014


On Sat, Mar 22, 2014 at 2:13 PM, hasif [guest] <guest at bioconductor.org> wrote:
> Hi there,
>> I am a Post-doc student started analyzing human genome data few days
>> back. My aim is to find UVA signature mutations. i have done variant
>> calling by GATK and was wondering how i can extract signatures using
>> these call without using much programming (as I am a biologist working
>> in Bioinformatics field). while doing search on web i came
>> across Package â EURO ~SomaticSignaturesâ EURO (tm). i have some questions
>> can you please suggest what can help me in handling this package?
>> My first aim is to use my data and find sequence context of  these variants
>> please suggest me any easy guide to start with

Have you read through the rather extensive looking vignette?


Steve Lianoglou
Computational Biologist

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