[BioC] Sciplot: Increasing the width of bargraph and decreasing the sapce b/n groups

[James W. MacDonald]

Hi Roopa,

If I am not mistaken, sciplot is a CRAN package, in which case you are 
using the wrong listserv. Please use R-help for CRAN packages 
(r-help at r-project.org).

Best,

Jim


On 5/5/2014 2:54 PM, Roopa Subbaiaih wrote:
> Hello,
>
> I am trying to plot bargraphs susing Sciplot. Is there a way to increase
> the width of the bar graphs and decrease the space b/n the groups? I am
> pasting the script as well as attaching the graph.
>
> Bio6 <- read.csv("Data/Plin1.csv",na.strings="",header=T)
> attach(Bio6)
> head(Bio6)
> par(family="serif", font=11)
> Bio6$Sps <- factor(Bio6$Sps, levels = c("FFA1", "FFA2","FFA3"))
> Bio6$Gp <- factor(Bio6$Gp, levels = c("N-FFA1",
> "FU1","FA1","N-FFA2","FU2","FA2","N-FFA3","FU3","FA3"))
> bargraph.CI(Sps, O.D, group = Gp, data = Bio6,ylab = "Relative expression
> levels", cex.lab = 1.5, y.leg = 6,cex.leg = 0.82,cex=1.5, axisnames=TRUE,
> col = c("red","blue","grey"),space=c(0, 0.5), ylim=c(0,7),cex.names =
> 1.0,density = c(30,30,30), legend = TRUE, main="PLIN1")
> detach(Bio6)
>
>   O.D     Gp  Sps
> 1  1.000000 N-FFA1 FFA1
> 2  2.996432    FU1 FFA1
> 3  3.223413    FU1 FFA1
> 4  3.524465    FU1 FFA1
> 5  1.311971    FA1 FFA1
> 6  6.755860    FA1 FFA1
> 7  1.566000    FA1 FFA1
> 8  1.000000 N-FFA2 FFA2
> 9  2.741612    FU2 FFA2
> 10 2.800644    FU2 FFA2
> 11 3.569509    FU2 FFA2
> 12 4.141500    FA2 FFA2
> 13 7.049476    FA2 FFA2
> 14 4.694674    FA2 FFA2
> 15 1.000000 N-FFA3 FFA3
> 16 4.163601    FU3 FFA3
> 17 3.903986    FU3 FFA3
> 18 4.730000    FU3 FFA3
> 19 0.000000    FA3 FFA3
> 20 0.000000    FA3 FFA3
> 21 0.000000    FA3 FFA3
> Any help would be appreciated.
>
> Thanks in advance, Roopa
>
>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099