[BioC] error in loading minfi package

guest [guest] guest at bioconductor.org
Wed May 7 15:50:05 CEST 2014


Dear users,

I tried to load minfi package, it has an error message

> library(minfi)
Loading required package: reshape
Error in FUN("expand"[[1L]], ...) : lazy-load database 'P' is corrupt
In addition: Warning messages:
1: package ‘reshape’ was built under R version 3.1.0 
2: In FUN("expand"[[1L]], ...) : restarting interrupted promise evaluation
3: In FUN("expand"[[1L]], ...) : internal error -3 in R_decompress1

After I installed reshape package, it still has the error. 

Please help to let me know what's it wrong.

Thanks a lot 


 -- output of sessionInfo(): 

> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] lumi_2.14.2              BiocInstaller_1.12.1     VariantAnnotation_1.8.13 Rsamtools_1.14.3         Biostrings_2.30.1        GenomicRanges_1.14.4    
 [7] XVector_0.2.0            IRanges_1.20.7           ggplot2_0.9.3.1          phyloseq_1.6.1           picante_1.6-2            nlme_3.1-117            
[13] ape_3.1-1                ade4_1.6-2               knitr_1.5                vegan_2.0-10             lattice_0.20-29          permute_0.8-3           
[19] biom_0.3.12              metagenomeSeq_1.5.47     devtools_1.5             gplots_2.13.0            RColorBrewer_1.0-5       matrixStats_0.8.14      
[25] limma_3.18.13            Biobase_2.22.0           BiocGenerics_0.8.0      

loaded via a namespace (and not attached):
 [1] affy_1.40.0            affyio_1.30.0          annotate_1.40.1        AnnotationDbi_1.24.0   base64_1.1             beanplot_1.1          
 [7] biomaRt_2.18.0         bitops_1.0-6           BSgenome_1.30.0        bumphunter_1.2.0       caTools_1.17           cluster_1.15.2        
[13] codetools_0.2-8        colorspace_1.2-4       DBI_0.2-7              dichromat_2.0-0        digest_0.6.4           doRNG_1.6             
[19] evaluate_0.5.5         foreach_1.4.2          formatR_0.10           gdata_2.13.3           genefilter_1.44.0      GenomicFeatures_1.14.5
[25] grid_3.0.2             gtable_0.1.2           gtools_3.4.0           httr_0.3               igraph_0.7.1           illuminaio_0.4.0      
[31] iterators_1.0.7        itertools_0.1-3        KernSmooth_2.23-12     labeling_0.2           locfit_1.5-9.1         MASS_7.3-32           
[37] Matrix_1.1-3           mclust_4.3             memoise_0.2.1          methylumi_2.8.0        mgcv_1.7-29            minfi_1.8.9           
[43] multtest_2.18.0        munsell_0.4.2          nleqslv_2.1.1          nor1mix_1.1-4          pkgmaker_0.20          plyr_1.8.1            
[49] preprocessCore_1.24.0  proto_0.3-10           R.methodsS3_1.6.1      Rcpp_0.11.1            RCurl_1.95-4.1         registry_0.2          
[55] reshape_0.8.5          reshape2_1.4           RJSONIO_1.2-0.2        rngtools_1.2.4         RSQLite_0.11.4         rtracklayer_1.22.7    
[61] scales_0.2.4           siggenes_1.36.0        splines_3.0.2          stats4_3.0.2           stringr_0.6.2          survival_2.37-7       
[67] tools_3.0.2            whisker_0.3-2          XML_3.95-0.2           xtable_1.7-3           zlibbioc_1.8.0        
> 

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