[BioC] DiffBind time course

Enrico Ferrero enricoferrero86 at gmail.com
Mon Sep 8 13:01:57 CEST 2014


Is there a way to use DiffBind to analyse time course data?
I have sample and control replicates at five different time points and
I would like to know which sites show differential binding over time.

At the moment I'm doing multiple pairwise comparisons (i.e: sample at
24h vs control at 24h) and I'm trying to understand if it's possible
at all and, if yes, what parameters I should pass to dba.contrast()
and dba.analyze().


Enrico Ferrero

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