[BioC] Repeat masker sequences as GRanges object
Hermann Norpois
hnorpois at gmail.com
Thu Sep 11 12:16:59 CEST 2014
Hello,
I would like to have repeat sequences as GRanges object
I started with ...
library (BSgenome.Hsapiens.UCSC.hg19)
ch1 <- Hsapiens$chr1
active (masks (ch1))
AGAPS AMB RM TRF
TRUE TRUE FALSE FALSE
active (masks(ch1))["RM"] <- TRUE
active (masks (ch1))
AGAPS AMB RM TRF
TRUE TRUE TRUE FALSE
Can anyboldy give me a hint how to continue.
Thanks
hermann
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