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| ebam | Empirical Bayes Analysis of Microarrays |
| ebam.wilc | Empirical Bayes Analysis using Wilcoxon Rank Sums |
| find.a0 | Computation of the Fudge Factor |
| quantiles | Empirical Quantiles |
| sam | Significance Analysis of Microarrays |
| sam.lambda | Further SAM analysis |
| sam.plot | SAM Analysis for a specific threshold |
| sam.wilc | SAM Analysis using Wilcoxon Rank Sums |