Hi,
I'm trying to plot some spottypes described in the usersguide of limma
(section 4.6). Unfortunately, I dont seem to be able to do this if I
follow the instructions in the guide.
Here is the input and output
Courier0000,0000,FFFF>
spottypes<<-readSpotTypes()
> spottypes
SpotType ID Name Color
1 gene * * Black
2 Calibration-1 Spot Report Product 1 * red
3 Calibration-2 Spot Report Product 10 * red
4 Calibration-3 Spot Report Product 2 * red
5 Calibration-4 Spot Report Product 3 * red
6 Calibration-5 Spot Report Product 4 * red
7 Calibration-6 Spot Report Product 5 * red
8 Calibration-7 Spot Report Product 6 * red
9 Calibration-8 Spot Report Product 7 * red
10 Calibration-9 Spot Report Product 8 * red
11 Calibration-10 Spot Report Product 9 * red
12 Empty Empty * yellow
13 Buffer 3XSSC 1.5M Betaine * blue
14 No data No data * pink
15 Human Cot Human Cot 1 * green
16 Mouse Cot Mouse Cot 1 * green
17 B Actin B-Human Actin * purple
18 Poly A Poly A * orange
19 Salmon Sperm Salmon Sperm * orange
> RG$genes$Status<<-spotStatus(spottypes)
Error: couldn't find function "spotStatus"
>
0000,0000,0000In
addition, I dont seem to be able to find any mention of a "spotStatus"
function via search.
Any help would be appreciated.
thanks
Simon.