<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<title></title>
</head>
<body>
dear all<br>
<br>
I am trying to install the package Rgraphviz on a redhat linux 8.0. I have
<br>
just installed the latest version of Graphviz too. This is what I get if
I try<br>
to install...<br>
<br>
any help would be appreciated<br>
<br>
Rohit<br>
<br>
> <b>getBioC("graph")</b><br>
Running getBioC version 1.2.60....<br>
If you encounter problems, first make sure that<br>
you are running the latest version of getBioC()<br>
which can be found at: <a class="moz-txt-link-abbreviated" href="http://www.bioconductor.org/getBioC.R">www.bioconductor.org/getBioC.R</a><br>
<br>
Please direct any concerns or questions to <a class="moz-txt-link-abbreviated" href="mailto:bioconductor@stat.math.ethz.ch">bioconductor@stat.math.ethz.ch</a>.<br>
<br>
Loading required package: reposTools<br>
[1] "Attempting to download Rgraphviz from <a class="moz-txt-link-freetext" href="http://www.bioconductor.org/repository/release1.4/package/Source">http://www.bioconductor.org/repository/release1.4/package/Source</a>"<br>
[1] "Download complete."<br>
[1] "Installing Rgraphviz"<br>
* Installing *source* package 'Rgraphviz' ...<br>
** libs<br>
gcc -I/usr/local/lib/R/include `dotneato-config --cflags` -D__NO_MATH_INLINES
-mieee-fp -Wall -fPIC -g -O2 -c Rgraphviz.c -o Rgraphviz.o<br>
In file included from /usr/local/include/graphviz/render.h:45,<br>
from common.h:21,<br>
from Rgraphviz.c:1:<br>
/usr/local/include/graphviz/macros.h:28:1: warning: "NEW" redefined<br>
In file included from common.h:13,<br>
from Rgraphviz.c:1:<br>
/usr/local/lib/R/include/Rdefines.h:129:1: warning: this is the location
of the previous definition<br>
Rgraphviz.c: In function `Rgraphviz_agopen':<br>
Rgraphviz.c:244: warning: implicit declaration of function `GD_gvc'<br>
Rgraphviz.c:244: invalid lvalue in assignment<br>
make: *** [Rgraphviz.o] Error 1<br>
ERROR: compilation failed for package 'Rgraphviz'<br>
** Removing '/usr/local/lib/R/library/Rgraphviz'<br>
[1] "Attempting to download RBGL from <a class="moz-txt-link-freetext" href="http://www.bioconductor.org/repository/release1.4/package/Source">http://www.bioconductor.org/repository/release1.4/package/Source</a>"<br>
[1] "Download complete."<br>
[1] "Installing RBGL"<br>
* Installing *source* package 'RBGL' ...<br>
untarring boost include tree...<br>
** libs<br>
g++ -I/usr/local/lib/R/include -mieee-fp -IboostIncl -ftemplate-depth-30
-g -fPIC -g -O2 -c interfaces.cpp -o interfaces.o<br>
g++ -shared -L/usr/local/lib -o RBGL.so interfaces.o<br>
** R<br>
** data<br>
** inst<br>
** save image<br>
[1] TRUE<br>
[1] "bfs"<br>
[1] "bfs"<br>
[1] "bfs"<br>
[1] "dfs"<br>
[1] "dfs"<br>
[1] "dfs"<br>
<br>
** help<br>
>>> Building/Updating help pages for package 'RBGL'<br>
Formats: text html latex example<br>
FileDep text html latex example<br>
bfs text html latex example<br>
connectedComp text html latex example<br>
dijkstra.sp text html latex example<br>
edgeConn text html latex example<br>
extractPath text html latex example<br>
mstree.kruskal text html latex example<br>
sp.between text html latex example<br>
strongComp text html latex example<br>
tsort text html latex example<br>
* DONE (RBGL)<br>
[1] "Installation complete"<br>
>From URL: <a class="moz-txt-link-freetext" href="http://www.bioconductor.org/repository/release1.4/package/Source">http://www.bioconductor.org/repository/release1.4/package/Source</a><br>
Rgraphviz version 1.4.0<br>
RBGL version 1.2.2<br>
<br>
Packages Rgraphviz and rhdf5 require special libraries to be installed.<br>
Please see the URL <a class="moz-txt-link-freetext" href="http://www.bioconductor.org/faq.html#Other">http://www.bioconductor.org/faq.html#Other</a> Notes for<br>
more details on installing these packages if they fail<br>
to install properly<br>
<br>
<b>Warning message:<br>
Installation of package Rgraphviz had non-zero exit status in: installPkg(fileName,
pkg, pkgVer, type, lib, repEntry, versForce)<br>
> library(Rgraphviz)<br>
Error in library(Rgraphviz) : There is no package called 'Rgraphviz'</b><br>
><br>
<br>
<br>
<br>
</body>
</html>