[Rd] Bug list summary (automatic post)

Peter Dalgaard BSA pd@pubhealth.ku.dk
Thu, 7 Jun 2001 07:15:06 +0200


=================================================
This is an automated summary of the status of the R-bugs
repository.

Note that this may be neither complete nor perfectly
correct at any given instance: Not all bugs are reported,
and some reported bugs may have been fixed, but the
repository not yet updated.

Some bug fixes are difficult to verify because they pertain
to specific hardware or operating system versions. If you
have information to contribute, please do so.

If you happen to know how to fix a problem please send
patches to the bug repository, too.

New bugs are reported either through the web
interface at r-bugs.r-project.org or via email to
r-bugs@r-project.org. The bug.report() function can be
used to automate parts of the procedure on many systems.
Followups on older bugs can be done by including the string
"(PR#999)" in the Subject of an email (change 999 to the
actual reference number, of course!).
=================================================

Directory:  Accuracy

* PR# 751 *
Subject: BUG: polyroot()
From: "Li Dongfeng" <mavip1@inet.polyu.edu.hk>
Date: Tue, 28 Nov 2000 13:24:33 +0800
--Numerical instability. We may want a better algorithm!

Directory:  Add-ons

* PR# 966 *
Subject: update.packages() and parse(text="A B")
From: Uwe Ligges <ligges@statistik.uni-dortmund.de>
Date: Sun, 03 Jun 2001 15:34:41 +0200
--Error in DESCRIPTION file of gregmisc
--Windows pre-compiled version is fixed
* PR# 496 *
From: bonneau@epi.roazhon.inra.fr (en148)
Date: Tue, 21 Mar 2000 10:57:13 +0100 (MET)
--base R has no est.variogram function.
--This appears to be a bug report on sgeostat.
* PR# 930 *
Subject: Re: [R] Crazy plots of time-series against dates
From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk>
Date: 01 May 2001 21:33:53 +0200
--error in chron package
* PR# 950 *
Subject:  lattice: dev.print(postscript) gives probl. false background Info 
From: Peter Malewski <p.malewski@tu-bs.de>
Date: Sat, 26 May 2001 23:20:29 +0200
* PR# 948 *
Subject:  xyplot,grid.text segfault 
From: Peter Malewski <p.malewski@tu-bs.de>
Date: Sat, 26 May 2001 13:24:11 +0200

Directory:  Analyses

none

Directory:  Documentation

* PR# 942 *
Subject: Minor documentation issue
From: jebacklund@dowagro.com
Date: Wed, 16 May 2001 19:58:13 +0200 (MET DST)
--There is an objects() function, and help(objects) documents it. I don't see the
--problem here.
* PR# 899 *
Subject: documentation problems in str.Rd
From: Kurt Hornik <Kurt.Hornik@ci.tuwien.ac.at>
Date: Sat, 7 Apr 2001 23:08:23 +0200
--fixed (both code and documentation) for 1.3  (MM).

Directory:  Graphics

* PR# 943 *
Subject: legend() with xpd=T; omission of initial plot character
From: John Maindonald <john.maindonald@anu.edu.au>
Date: Sun, 20 May 2001 10:35:16 +1000
* PR# 660 *
Subject: identify.default ignores any setting of cex.
From: Prof Brian Ripley <ripley@stats.ox.ac.uk>
Date: Fri, 15 Sep 2000 10:23:39 +0100 (BST)
* PR# 202 *
Subject: persp box occlusion bug
From: wsi@gcal.ac.uk
Date: Wed, 2 Jun 1999 15:02:03 +0200 (MET DST)
--The persp algorithm does not apply the occlusion rules to the frame, 
--which is always plotted first. 
--A bug, but not very simple to fix.
* PR# 776 *
Subject: strwidth does not take font into account
From: Martyn Plummer <plummer@iarc.fr>
Date: Tue, 19 Dec 2000 14:56:01 +0100 (CET)
--This needs a substantial redesign.
* PR# 750 *
Subject: abline() does not obey "xpd" (clipping rules)
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Mon, 27 Nov 2000 18:27:11 +0100
* PR# 816 *
Subject: dotplot: character size of labels
From: RINNER Heinrich <H.RINNER@TIROL.GV.AT>
Date: Thu, 18 Jan 2001 14:54:32 +0100
--Suggested fix is incorporated in 1.2.2.
--
--There is a deeper problem:  mtext() ignores par(cex=.5) in general.  
--To see the problem try:  par(cex=.5); mtext("hi")
--Paul thinks the right fix is to change the argument list for mtext so that
--cex=par(cex) by default rather than cex=NA by default (plus corresponding
--internal changes to  do_mtext in plot.c).
--This needs to be done very carefully because (i) the change suggested above 
--mayhave side-effects in many other pieces of interpreted code 
--(ii) do_mtext ignores dd->gp.cexbase unlike, for example, do_plot_xy 
--and anything to do with cexbase needs extreme care.
* PR# 791 *
Subject:  par(lab= *) / axis(*) bug 
From: maechler@stat.math.ethz.ch
Date: Fri, 22 Dec 2000 10:59:26 +0100
* PR# 828 *
Subject: termplot fails for composite non-factor terms
From: John Maindonald <john.maindonald@anu.edu.au>
Date: Sat, 27 Jan 2001 11:57:37 +1100 (EST)
--Neither of the proposed changes actually works in sufficient generality.
--
--The easy and unimportant part of this, the labels, is fixed in 1.2.2. Getting
--the data right is a project for 1.3
* PR# 820 *
Subject: interaction.plot
From: "Mark M. Span" <span@psy.uva.nl>
Date: Mon, 22 Jan 2001 10:47:39 +0100
--mtext is unscaled by default.  It is not clear if this should
--use the par("cex") setting or an inline cex setting such as cex.axis.
--It might make more sense to use axis rather than mtext, as boxplot does.
* PR# 837 *
Subject: screen doesn't handle redrawing properly
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 01 Feb 2001 14:20:52 -0500
* PR# 831 *
Subject: screen can't go back to (split) screen with log="y" plot
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 30 Jan 2001 00:39:41 -0500
--Still there. Suggested fix included in followups, but we didn't get around to
--try it in time for 1.2.3
* PR# 865 *
Subject:  axis(...,las=1) breaks postscript code in certain cases 
From: maechler@stat.math.ethz.ch
Date: Wed, 7 Mar 2001 18:08:58 +0100
* PR# 857 *
Subject: Plotting points on a filled.contour plot
From: marchini@stats.ox.ac.uk
Date: Tue, 27 Feb 2001 10:00:30 +0100 (MET)
--This needs at least to be documented, and preferably par("usr")
--set to the coordinate system of the plotting region after use.
--
--Added note and example to help file to explain how to annotate
--filled contour.  Paul 24/5/01
* PR# 916 *
Subject:  par(mgp) bug 
From: paul@stat.auckland.ac.nz
Date: Fri, 20 Apr 2001 08:33:45 +1200 (NZST)
* PR# 887 *
Subject: axis(adj=anything) has no effect
From: jhallman@frb.gov
Date: Wed, 28 Mar 2001 20:51:05 +0200 (MET DST)
* PR# 940 *
Subject: GCircle(): fails for non-clippable devices under certain circumstances (see below)
From: "Thomas Hoffmann" <thoffman@zappa.sax.de>
Date: Tue, 15 May 01 23:34:17 +0100
* PR# 932 *
Subject: scoping error in xy.coords
From: kjetil halvorsen <kjetilh@umsanet.edu.bo>
Date: Fri, 04 May 2001 11:20:57 -0400

Directory:  In-Out

none

Directory:  Installation

* PR# 924 *
Subject: bug when compiling using --with-f2c option
From: wang@rjka.com
Date: Thu, 26 Apr 2001 19:58:17 +0200 (MET DST)
--same as 923
* PR# 923 *
Subject: bug when compiling using --with-f2c option
From: wang@rjka.com
Date: Thu, 26 Apr 2001 19:56:59 +0200 (MET DST)
--too little information

Directory:  Language

* PR# 937 *
Subject: name creation with index arrays
From: sint@oeaw.ac.at
Date: Thu, 10 May 2001 23:31:58 +0200 (MET DST)
* PR# 412 *
Subject: anomalies with call objects
From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk>
Date: 06 Feb 2000 01:18:50 +0100
* PR# 408 *
Subject: convolution bug
From: wsimpson@gcal.ac.uk
Date: Fri, 28 Jan 2000 11:17:36 +0100 (MET)
* PR# 921 *
Subject:  Managed to confuse match.arg 
From: J.C.Rougier@durham.ac.uk
Date: Wed, 25 Apr 2001 12:22:54 +0100 (BST)
* PR# 669 *
Subject: Bug(s) w/ rbind.data.frame(); fix also read.table(*, as.is = TRUE) ?
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Mon, 25 Sep 2000 10:17:15 +0200
--status of AsIs columns

Directory:  Low-level

* PR# 505 *
Subject: interrupted save 
From: Thomas Lumley <thomas@biostat.washington.edu>
Date: Sat, 25 Mar 2000 12:16:50 -0800 (PST)

Directory:  Misc

none

Directory:  Models

* PR# 862 *
Subject: Wrong sign for Pearson residuals
From: faraway@umich.edu
Date: Mon, 5 Mar 2001 18:04:34 +0100 (MET)

Directory:  Startup

* PR# 486 *
Subject: Re: autoload error in profile {was anova-bug in R-version  1.0.0?}
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Tue, 14 Mar 2000 10:32:43 +0100 (MET)
--workaround to the origin problem in 1.0.1
--New report: try does not work from the profile.

Directory:  System-specific

* PR# 964 *
Subject: R-1.2.3 OSF precompiled binary doesn't run under DU4.0D
From: paul@gromit.dlib.vt.edu
Date: Fri, 1 Jun 2001 17:47:10 +0200 (MET DST)
* PR# 851 *
Subject: Comments on R-1.2.1 builds
From: "Nelson H. F. Beebe" <beebe@math.utah.edu>
Date: Fri, 16 Feb 2001 17:44:17 -0700 (MST)
--These are only warnings: some have been eliminated for 1.2.2.
--Some are about constructs needed to satisfy other compilers.
--
--Also: configure problem with g77 on SGI.
--(Should be taken care of for 1.2.3).
* PR# 848 *
Subject: X11 device doesn't handle destroy events correcly
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 13 Feb 2001 17:40:46 -0500
* PR# 935 *
Subject:  help.start() fails 
From: "Wilhelm B. Kloke" <wb@vestein.arb-phys.uni-dortmund.de>
Date: Wed, 9 May 2001 13:43:49 +0200 (MET DST)
--Report on 1.2.1: on other systems the file is installed with 644.
* PR# 863 *
Subject: src/main/arithmetic.c on OpenBSD
From: ian@darwinsys.com (Ian Darwin)
Date: Tue,  6 Mar 2001 19:49:53 -0500 (EST)
--Not applied for 1.2.3 (why?)

Directory:  TooMuchAtOnce

* PR# 918 *
Subject: several bugs
From: Rich Heiberger <rmh@surfer.sbm.temple.edu>
Date: Sun, 22 Apr 2001 23:13:38 -0400 (EDT)
--1. as.numeric -> use as.double.FOO for methods -- doc.fixed for 1.2.3
--2. cannot set attribute on NULL -- no bug
--3. rep(list() ... ) :  a wish  fulfilled for 1.3.x
--4. %*% is not a generic in R (but is fast!) but in S+  -- not a bug
--5. S-plus (S4) compatibility  -- a wish but not for now
--6. list()s with dim() attribute -- an ongoing `research topic'  :-)
* PR# 811 *
Subject: problem with strptime example (and mention of bug.report)
From: Stephen Eglen <stephen@anc.ed.ac.uk>
Date: Thu, 11 Jan 2001 19:18:39 GMT
--1) On OSF4, strptime is deficient. Nothing we can do.
--
--2) On Windows NT, the strptime problems are (i) German locale, English dates,
--(ii) Windows system errors with unknown DST (it move times to DST).
--(i) now has another warning in the help file (there already was one).
--(ii) was already worked around for 1.2.1.
--
--3) bug.report() uses a mailer option that does not exist on OSF4.

Directory:  Windows

* PR# 927 *
Subject: Rgui 1.2.3 for Windows crashes reading huge CSV file
From: znmeb@aracnet.com
Date: Mon, 30 Apr 2001 07:14:50 +0200 (MET DST)
--Not clear this is to do with Windows.
* PR# 926 *
Subject: Rgui crash
From: bellis@hsph.harvard.edu
Date: Sun, 29 Apr 2001 20:45:15 +0200 (MET DST)
--Unable to reproduce even on a Win2k machine
* PR# 912 *
Subject: Rgui.exe crash on Windows 2000
From: gilg.seeber@uibk.ac.at
Date: Thu, 12 Apr 2001 15:07:52 +0200 (MET DST)
--seems to be specific to the submitter's system.
--Cannot reproduce.
* PR# 906 *
Subject: Win98 wheelmouse graphics lock problem
From: cpaul@ucla.edu
Date: Tue, 10 Apr 2001 17:50:44 +0200 (MET DST)
--Cannot reproduce without more information
--In particular, does not happen with Microsoft Intellimouse on W2K

Directory:  incoming

* PR# 970 *
Subject: error in dbeta
From: pwolf@wiwi.uni-bielefeld.de
Date: Wed, 6 Jun 2001 18:31:30 +0200 (MET DST)
* PR# 953 *
Subject: bugs in deriv(*, *, function.arg = ) 
Subject: PROTECT() bugs in deriv(*, *, function.arg = ) 
From: Martin Maechler <maechler@stat.math.ethz.ch>
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Mon, 28 May 2001 10:44:59 +0200
Date: Mon, 16 Apr 2001 21:02:10 +0200
--The second bug is a missing PROTECT. 
* PR# 956 *
Subject: unbelievable parser bug
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Tue, 29 May 2001 14:25:00 +0200
* PR# 955 *
Subject: argument names in generic print functions
From: Richard Beare <Richard.Beare@cmis.csiro.au>
Date: Tue, 29 May 2001 09:49:06 +1000
* PR# 969 *
Subject: error in make install-info
From: Paulo Justiniano Ribeiro Jr <p.ribeiro@lancaster.ac.uk>
Date: Tue, 5 Jun 2001 18:43:13 +0100 (BST)
* PR# 968 *
Subject: a bug?
From: Michael Lavine <michael@stat.duke.edu>
Date: Tue, 5 Jun 2001 10:15:13 -0400
* PR# 967 *
Subject: boxplot.stats() returns wrong value for n
From: gregory_r_warnes@groton.pfizer.com
Date: Mon, 4 Jun 2001 19:29:02 +0200 (MET DST)
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