[Rd] Install R-patched_2006-07-13 on i386-pc-solaris2.10 with Sun Studio 11
Latchezar Dimitrov
ldimitro at wfubmc.edu
Tue Aug 1 16:49:21 CEST 2006
Dear R-developers:
Anybody having installed R-patched_2006-07-13 on i386-pc-solaris2.10
with Sun Studio 11, I need you help/advice please.
Thank you very much
Latchezar Dimitrov
> -----Original Message-----
> From: Latchezar Dimitrov
> Sent: Wednesday, July 26, 2006 4:48 PM
> To: 'Prof Brian Ripley'
> Cc: r-devel at stat.math.ethz.ch
> Subject: RE: [Rd] Install R-patched_2006-07-13 on
> i386-pc-solaris2.10 with Sun Studio 11
>
> Dear Prof. Ripley and R-developers:
>
> Thank you very much for the reply. Please see bellow
>
> > -----Original Message-----
> > From: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk]
> > Sent: Wednesday, July 26, 2006 2:37 AM
> > To: Latchezar Dimitrov
> > Cc: r-devel at stat.math.ethz.ch
> > Subject: Re: [Rd] Install R-patched_2006-07-13 on
> i386-pc-solaris2.10
> > with Sun Studio 11
> >
> > On Wed, 26 Jul 2006, Latchezar Dimitrov wrote:
> >
> > > Dear R-developers:
> > >
> > > I'm trying to build a 64-bit R-patched_2006-07-24 on
> > SunFire V40z with
> > > on Solaris OS 10 64-bit kernel and using Sun Studio 11 compilers.
> > > Everything runs OK until it gets to building package
> tools (all.R)
> > > where it fails. Bellow is how I tried it (I can provide any other
> > > additional info if needed). Any help please?
> >
> > You seem to have gcc 4.1.1 in your paths, so can you try
> that instead.
>
> True (that's why I gave the env) however that is c/c++ only.
> I cannot build gcc fortran right way and since R is on top of
> my list I switched to Sun Studio 11. I included the libraries
> and the path in order to use makeinfo and readline which I
> compiled with that gcc (I build most essential gnu utils with
> it too as well as some applications and everything seems ok).
> To avoid misuse of it I explicitly specified all the programs
> that I knew could be mistaken (CC,CXX,etc), gnu ld was
> renamed. I as sure as one can that there was not any (mis)use
> of /usr/local/ except for readline and makeinfo (I believe
> the build did not go that far though). One additional thing
> that I missed in my prev. e-mail is that R binary was build
> seemingly properly, i.e., it starts ok however with
> complaints about missing base parts (obviously).
>
> Now to make it clear it has nothing to do with that gcc I
> removed all the paths from the environment and to make sure
> nothing leaks through I renamed /usr/local so it stays out of
> the way. Then I set --with-readline=no and started clean (as
> you may have already noticed I build in a separate from src
> dir (obj-R) completely empty at the beginning. It failed the
> very same way.
>
> Further, I decided to give 32-bit build a try. To make things
> more interesting I restore /usr/local and the path to
> /usr/local/bin in order to be able to use makeinfo (since the
> only readline I had was a 64-bit one I gave it up). And
> voila, it built like a charm. The only tests that I noticed
> failed were those involving tcltk (I had only 64-bit ones installed).
>
> The only problem still remaining is I cannot care less about
> 32-bit version.
>
> Please find attached the log of 64-bit try and a little bit
> of 32 success in the end.
>
> So would someone please help me find out what is wrong and
> build my favorite 64-bit R?
>
> Thank you very much,
> Latchezar Dimitrov
>
>
> >
> > This looks like a fairly fundamental problem with your
> current build,
> > possibly a mis-compile.
> >
> > >
> > > Thank you very much
> > >
> > > Latchezar Dimitrov
> > > Wake Forest Univ. School of Medicine
> > >
> > >
> > >
> > > root at Huba # echo $PATH
> > >
> >
> /opt/SUNWspro/bin:/usr/sbin:/usr/bin:/usr/openwin/bin:/usr/ccs/bin:/us
> > > r/
> > >
> >
> openwin/bin:/usr/dt/bin:/usr/platform/i86pc/sbin:/opt/SUNWvts/bin:/opt
> > > /S
> > > UNWexplo/bin:/usr/local/bin
> > > root at Huba # echo $CC
> > > cc
> > > root at Huba # echo $CXX
> > > CC
> > > root at Huba # echo $CFLAGS
> > > -xarch=amd64 -xmodel=medium
> > > root at Huba # echo $CXXFLAGS
> > > -xarch=amd64 -xmodel=medium
> > > root at Huba # echo $FCFLAGS
> > > -xarch=amd64 -xmodel=medium
> > > root at Huba # echo $FFLAGS
> > > -xarch=amd64 -xmodel=medium
> > > root at Huba # echo $LDFLAGS
> > > -xarch=amd64 -xmodel=medium
> > > root at Huba # echo $R_BROWSER
> > > /usr/sfw/bin/mozilla
> > > root at Huba # echo $r_arch
> > > amd64
> > > root at Huba # echo $LD_LIBRARY_PATH
> > >
> >
> /usr/openwin/lib:/usr/local/gcc-4.1.1-x86-bootstrap/lib/gcc/i386-pc-so
> > > la
> > >
> >
> ris2.10/4.1.1/amd64:/usr/local/lib:/usr/local/gcc-4.1.1-x86-bootstrap/
> > > li
> > >
> > b/gcc/i386-pc-solaris2.10/4.1.1/amd64:/usr/local/lib:/usr/loca
> > l/gcc-4.1.
> > >
> >
> 1-x86-bootstrap/lib/gcc/i386-pc-solaris2.10/4.1.1/amd64:/usr/local/lib
> > > root at Huba #
> > >
> > >
> > > ../src/R-patched_2006-07-24/configure
> > > --prefix=/opt/R-2.3.1-patched_2006-07-24-Sun_Studio_11
> > --with-readline
> > > --disable-mbcs R_PAPERSIZE=letter --disable-rpath --with-bzlib
> > > --with-zlib --with-spcre --with-tcltk --disable-R-profiling
> > > --disable-nls
> > >
> > >
> > >
> > > Error in parseNamespaceFile(package, package.lib, mustExist
> > = FALSE) :
> > > subscript out of bounds
> > > Execution halted
> > > *** Error code 1
> > > The following command caused the error:
> > > (cat
> > >
> >
> ../../../../src/R-patched_2006-07-24/src/library/tools/R/makeLazyLoad.
> > > R;
> > > \
> > > echo "makeLazyLoading(\"tools\")") | \
> > > R_DEFAULT_PACKAGES=NULL LC_COLLATE=C ../../../bin/R --vanilla
> > > --slave
> > > > /dev/null
> > > dmake: Fatal error: Command failed for target `all'
> > > Current working directory /export/data/obj-R/src/library/tools
> > > *** Error code 1
> > > The following command caused the error:
> > > for pkg in profile base tools utils grDevices graphics
> > stats datasets
> > > methods grid splines stats4 tcltk; do \
> > > (cd ${pkg} && dmake) || exit 1; \
> > > done
> > > dmake: Fatal error: Command failed for target `R'
> > > Current working directory /export/data/obj-R/src/library
> > > *** Error code 1
> > > The following command caused the error:
> > > for d in scripts include extra appl nmath unix main modules
> > library;
> > > do \
> > > (cd ${d} && dmake R) || exit 1; \
> > > done
> > > dmake: Fatal error: Command failed for target `R'
> > > Current working directory /export/data/obj-R/src
> > > *** Error code 1
> > > The following command caused the error:
> > > for d in m4 tools doc etc share src tests; do \
> > > (cd ${d} && dmake R) || exit 1; \
> > > done
> > > dmake: Fatal error: Command failed for target `R'
> > > root at Huba #
> > >
> > > ______________________________________________
> > > R-devel at r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/r-devel
> > >
> > >
> >
> > --
> > Brian D. Ripley, ripley at stats.ox.ac.uk
> > Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> > University of Oxford, Tel: +44 1865 272861 (self)
> > 1 South Parks Road, +44 1865 272866 (PA)
> > Oxford OX1 3TG, UK Fax: +44 1865 272595
> >
More information about the R-devel
mailing list