[Rd] BATCH and testing
Prof Brian Ripley
ripley at stats.ox.ac.uk
Fri Dec 26 09:09:24 CET 2008
On Thu, 25 Dec 2008, Terry Therneau wrote:
> In a few of my test scripts for the survival code I expect warning messages
> (I actually try to trigger a couple). Using R BATCH infile outfile these
> messages don't end up in outfile, where I can compare them to what was
> expected. I don't see an option to change this.
I don't see this:
tystie% cat infile
warning("test of warning")
tystie% cat outfile
R version 2.8.1 (2008-12-22)
Copyright (C) 2008 The R Foundation for Statistical Computing
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
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R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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> warning("test of warning")
test of warning
user system elapsed
0.314 0.037 0.346
so the asked-for reproducible example, please.
> R < infile >& outfile works.
In [t]csh, I presume. BATCH uses 2>1%, the sh equivalent.
> But is there a way to get it to continue on after errors?
as given in the help for stop().
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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