[Rd] Mac crash with installing packages (PR#10764)

Albert Vernon Smith albert at hjarta.is
Fri Feb 15 17:45:51 CET 2008


My original description was not full enough.  I only get the crash  
when I'm installing from source.  If I install precompiled binaries,  
I seem to be fine.  Also, if I install via the command  
'install.packages(type="source")', I don't get a crash.  It is  
specific to the "Package Installer" menu option with "source" installs.

I still think this could be something specific to me, though I saw it  
immediately upon upgrading to 2.6.2.  The crash is completely silent  
w.r.t. what appears in R.  If I choose the "report" option of what  
should be sent to Apple, I get the report below.

-albert

=======

Date/Time:      2008-02-15 16:28:25.523 +0000
OS Version:     10.4.11 (Build 8S2167)
Report Version: 4

Command: R
Path:    /Applications/R.app/Contents/MacOS/R
Parent:  WindowServer [378]

Version: R 2.6.2 GUI 1.23 (4932) (4932)

PID:    10466
Thread: 2

Exception:  EXC_BREAKPOINT (0x0006)
Code[0]:    0x00000002
Code[1]:    0x00000000


Thread 0:
0   libSystem.B.dylib        	0x90037b57 mach_wait_until + 7
1   org.R-project.R          	0x000060dd -[RController  
handleSystemCommand:] + 602
2   org.R-project.R          	0x0000d1cb Re_system + 86
3   libR.dylib               	0x00457366 R_system + 82
4   libR.dylib               	0x004b0066 do_system + 656
5   libR.dylib               	0x003ba55c do_internal + 336
6   libR.dylib               	0x0038518e Rf_eval + 1182
7   libR.dylib               	0x00385f3f do_begin + 58
8   libR.dylib               	0x0038518e Rf_eval + 1182
9   libR.dylib               	0x003874a4 Rf_applyClosure + 663
10  libR.dylib               	0x00385085 Rf_eval + 917
11  libR.dylib               	0x00389576 do_set + 592
12  libR.dylib               	0x0038518e Rf_eval + 1182
13  libR.dylib               	0x00385f3f do_begin + 58
14  libR.dylib               	0x0038518e Rf_eval + 1182
15  libR.dylib               	0x00388deb do_for + 585
16  libR.dylib               	0x0038518e Rf_eval + 1182
17  libR.dylib               	0x00385f3f do_begin + 58
18  libR.dylib               	0x0038518e Rf_eval + 1182
19  libR.dylib               	0x0038518e Rf_eval + 1182
20  libR.dylib               	0x00385f3f do_begin + 58
21  libR.dylib               	0x0038518e Rf_eval + 1182
22  libR.dylib               	0x003874a4 Rf_applyClosure + 663
23  libR.dylib               	0x00385085 Rf_eval + 917
24  libR.dylib               	0x0034657a protectedEval + 44
25  libR.dylib               	0x00346beb R_ToplevelExec + 234
26  libR.dylib               	0x00346c2a R_tryEval + 56
27  org.R-project.R          	0x0000f624 -[REngine  
evaluateExpressions:] + 168
28  org.R-project.R          	0x0000fa08 -[REngine executeString:] +
202
29  org.R-project.R          	0x00013a09 -[PackageInstaller  
installSelected:] + 2978
30  com.apple.AppKit         	0x93383dbc -[NSApplication  
sendAction:to:from:] + 107
31  com.apple.AppKit         	0x93383d15 -[NSControl sendAction:to:]  
+ 101
32  com.apple.AppKit         	0x93385ec1 -[NSCell _sendActionFrom:] +
168
33  com.apple.AppKit         	0x933986a1 -[NSCell  
trackMouse:inRect:ofView:untilMouseUp:] + 1271
34  com.apple.AppKit         	0x933b6289 -[NSButtonCell  
trackMouse:inRect:ofView:untilMouseUp:] + 848
35  com.apple.AppKit         	0x933b5b39 -[NSControl mouseDown:] + 757
36  com.apple.AppKit         	0x933733e3 -[NSWindow sendEvent:] + 5279
37  com.apple.AppKit         	0x93365384 -[NSApplication sendEvent:]  
+ 5023
38  org.R-project.R          	0x00007ff2 -[RController  
doProcessEvents:] + 517
39  org.R-project.R          	0x00005680 -[RController  
handleReadConsole:] + 76
40  org.R-project.R          	0x0000cd2d Re_ReadConsole + 86
41  org.R-project.R          	0x00016362 run_REngineRmainloop + 271
42  org.R-project.R          	0x0000f336 -[REngine runREPL] + 406
43  org.R-project.R          	0x00002795 main + 1135
44  org.R-project.R          	0x0000230a _start + 216
45  org.R-project.R          	0x00002231 start + 41

Thread 1:
0   libSystem.B.dylib        	0x90009cd7 mach_msg_trap + 7
1   com.apple.CoreFoundation 	0x9082d23b CFRunLoopRunSpecific + 2014
2   com.apple.CoreFoundation 	0x9082ca56 CFRunLoopRunInMode + 61
3   com.apple.Foundation     	0x92854bca +[NSURLCache  
_diskCacheSyncLoop:] + 206
4   com.apple.Foundation     	0x927f82c0 forkThreadForFunction + 123
5   libSystem.B.dylib        	0x90024227 _pthread_body + 84

Thread 2 Crashed:
0   com.apple.Foundation     	0x9282b45f _NSRaiseError + 227
1   com.apple.Foundation     	0x9284747d -[NSConnection  
sendInvocation:] + 1378
2   com.apple.Foundation     	0x927fe448 -[NSObject 
(NSForwardInvocation) forward::] + 469
3   libobjc.A.dylib          	0x90a5ccc1 _objc_msgForward + 49
4   org.R-project.R          	0x0000483d -[RController readThread:] +
1508
5   com.apple.Foundation     	0x927f82c0 forkThreadForFunction + 123
6   libSystem.B.dylib        	0x90024227 _pthread_body + 84

Thread 3:
0   libSystem.B.dylib        	0x9003f6cf syscall_thread_switch + 7
1   com.apple.AppKit         	0x9336d6a2 -[NSUIHeartBeat  
_heartBeatThread:] + 1399
2   com.apple.Foundation     	0x927f82c0 forkThreadForFunction + 123
3   libSystem.B.dylib        	0x90024227 _pthread_body + 84

Thread 2 crashed with X86 Thread State (32-bit):
   eax: 0x010fc000  ebx: 0x9282b38a  ecx: 0x90a66b30  edx: 0x011e2920
   edi: 0x0d2633f0  esi: 0x0d263500  ebp: 0xb019f968  esp: 0xb019f900
    ss: 0x0000001f  efl: 0x00000246  eip: 0x9282b45f   cs: 0x00000017
    ds: 0x0000001f   es: 0x0000001f   fs: 0x00000000   gs: 0x00000037

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5.4.dylib
0x96da2000 - 0x96da2fff com.apple.vecLib 3.3.1 (vecLib 3.3.1)	/System/
Library/Frameworks/vecLib.framework/Versions/A/vecLib

Model: MacBookPro2,2, BootROM MBP22.00A5.B07, 2 processors, Intel  
Core 2 Duo, 2.16 GHz, 2 GB
Graphics: ATI Radeon X1600, ATY,RadeonX1600, PCIe, 128 MB
Memory Module: BANK 0/DIMM0, 1 GB, DDR2 SDRAM, 667 MHz
Memory Module: BANK 1/DIMM1, 1 GB, DDR2 SDRAM, 667 MHz
AirPort: AirPort Extreme, 1.2.2
Bluetooth: Version 1.9.5f4, 2 service, 0 devices, 1 incoming serial  
ports
Network Service: Built-in Ethernet, Ethernet, en0
Serial ATA Device: FUJITSU MHW2120BH, 111.79 GB
Parallel ATA Device: HL-DT-ST DVDRW GWA4080MA
USB Device: Built-in iSight, Micron, Up to 480 Mb/sec, 500 mA
USB Device: Hub, Up to 480 Mb/sec, 500 mA
USB Device: Hub in Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/ 
sec, 500 mA
USB Device: Apple Optical USB Mouse, Primax Electronics, Up to 1.5 Mb/ 
sec, 100 mA
USB Device: CP2102 USB to UART Bridge Controller, Silicon Labs, Up to  
12 Mb/sec, 100 mA
USB Device: Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/sec,  
250 mA
USB Device: Apple Cinema HD Display, Apple Computer, Inc., Up to 12  
Mb/sec, 500 mA
USB Device: Apple Internal Keyboard / Trackpad, Apple Computer, Up to  
12 Mb/sec, 500 mA
USB Device: IR Receiver, Apple Computer, Inc., Up to 12 Mb/sec, 500 mA
USB Device: Bluetooth USB Host Controller, Apple, Inc., Up to 12 Mb/ 
sec, 500 mA
FireWire Device: unknown_device, unknown_value, Unknown

=========


On Feb 15, 2008, at 4:20 PM, Simon Urbanek wrote:

>
> On Feb 15, 2008, at 10:05 AM, albert at hjarta.is wrote:
>
>> Full_Name: Albert Vernon Smith
>> Version: R 2.6.2
>> OS: MacOSX 10.4.11
>> Submission from: (NULL) (143.48.31.42)
>>
>>
>> Whenever I install a package in R 2.6.2 via the "R Package  
>> Installer" functionality (Mac OS X 10.4.11), R crashes after the  
>> installation.  When I restart, the installed package seems to be  
>> installed fine, just the annoying crash with each install.
>>
>
> I cannot reproduce the problem. When you see a crash, please send  
> us the full crash information.
>
> Thanks,
> Simon
>
>
 
 






 
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