Note to myself: read R-core before R-devel ;). It's apparently fixed by now. I have restarted the nightly build so the binaries should be up again soon.
Cheers,
Simon
On May 19, 2011, at 10:03 AM, Simon Urbanek wrote:
> Yes, this must be from some commit yesterday, because the build from previous night worked. I see the same error in the nightly builds:
>
> http://r.research.att.com/log-R-2.13-branch.leopard.i386.html
>
>
> On May 19, 2011, at 8:47 AM, Kasper Daniel Hansen wrote:
>
>> I am only reporting this because it is the current release branch and
>> not devel.
>>
>> R-2.13 from svn revision 55957 builds fine, but fails make check.
>> This happened with a fresh svn checkout 12 hours ago and it still
>> happens as of now. Two days ago I could build R-2.13 and it passed
>> make check on the same system, so I doubt it is a system problem. But
>> just in case my system details are a fresh install of OS X Snow
>> Leopard (new machine) with Xcode 4 and Simon's gfortran and a number
>> of his other libraries (readline, cairo, libpng, jpeg, pixman and some
>> others).
>>
>> Output from make check:
>>
>> running code in '../../R-2.13-src/tests/reg-examples1.R' ... OK
>> running code in '../../R-2.13-src/tests/reg-examples2.R' ... OK
>> running code in '../../R-2.13-src/tests/reg-packages.R' ...make[3]:
>> *** [reg-packages.Rout] Error 1
>> make[2]: *** [test-Reg] Error 2
>> make[1]: *** [test-all-basics] Error 1
>> make: *** [check] Error 2
>>
>> locating tests/reg-packages.Rout.fail I find
>>
>>> stopifnot(require("myTst",lib = "myLib"))
>> Loading required package: myTst
>>> sm <- findMethods(show, where= as.environment("package:myTst"))
>>> stopifnot(names(sm at names) == "foo")
>>> unlink("myTst_*")
>>>
>>> ## More building & installing packages
>>> ## NB: tests were added here for 2.11.0.
>>> ## NB^2: do not do this in the R sources!
>>> ## and this testdir is not installed.
>>> pkgSrcPath <- file.path(Sys.getenv("SRCDIR"), "Pkgs")
>>> if(file_test("-d", pkgSrcPath)) {
>> + ## could use file.copy(recursive = TRUE)
>> + system(paste('cp -r', shQuote(pkgSrcPath), shQuote(tempdir())))
>> + pkgPath <- file.path(tempdir(), "Pkgs")
>> + op <- options(warn=2) # There should be *NO* warnings here!
>> + ## pkgB tests an empty R directory
>> + dir.create(file.path(pkgPath, "pkgB", "R"), recursive = TRUE,
>> + showWarnings = FALSE)
>> + p.lis <- c("pkgA", "pkgB", "exS4noNS", "exNSS4")
>> + for(p. in p.lis) {
>> + cat("building package", p., "...\n")
>> + r <- build.pkg(file.path(pkgPath, p.))
>> + cat("installing package", p., "using file", r, "...\n")
>> + ## we could install the tar file ... (see build.pkg()'s definition)
>> + install.packages(r, lib = "myLib", repos=NULL, type = "source")
>> + stopifnot(require(p.,lib = "myLib", character.only=TRUE))
>> + detach(pos = match(p., sub("^package:","", search())))
>> + }
>> + ## TODO: not just print, but check the "list":
>> + print(installed.packages(lib.loc = "myLib", priority = "NA"))
>> + options(op)
>> + unlink("myLib", recursive = TRUE)
>> + unlink(file.path(pkgPath), recursive = TRUE)
>> + }
>> building package pkgA ...
>> Error in parse_description_field(desc, "BuildKeepEmpty", keep_empty1) :
>> object 'keep_empty1' not found
>> Execution halted
>> Error: (converted from warning) running command
>> '/Users/khansen/Source/R-2.13-build/bin/R CMD build --keep-empty-dirs
>> /var/folders/E3/E3ZBCIQ9El4LlIR92ARpyE+++TI/-Tmp-//Rtmpw9faGg/Pkgs/pkgA'
>> had status 1
>> Execution halted
>>
>> Kasper
>>
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>>
>>
>
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