[Rd] A bug in princomp(), perhaps?

[Ravi Varadhan]

Thank you, Peter.  Now I see that.  

I still think the documentation of `na.action' can be made more explicit to state that this option is only used for princomp.formula.

Best regards,
Ravi

-----Original Message-----
From: peter dalgaard [mailto:pdalgd at gmail.com] 
Sent: Friday, May 30, 2014 5:15 AM
To: Ravi Varadhan
Cc: r-devel at r-project.org
Subject: Re: [Rd] A bug in princomp(), perhaps?

It's only documented to work for princomp.formula; other methods do not know about na.action.

-pd

On 29 May 2014, at 22:10 , Ravi Varadhan <ravi.varadhan at jhu.edu> wrote:

> Hi,
> It may be my misunderstanding, but it seems that the "na.action" in the princomp() function for principal components analysis does not work.  Please see this simple example:
> 
> u <- matrix(rnorm(75), ncol=1)
> v <- matrix(rnorm(20), ncol=1)
> x <- u%*%t(v) + matrix(rnorm(20*75),ncol=20) x[1,1] <- NA pc.out <- 
> princomp(x, na.action=na.exclude) Error in cov.wt(z) : 'x' must 
> contain finite values only
>> 
> 
> Note, I have:
>> options("na.action")
> $na.action
> [1] "na.omit"
> 
> Thanks,
> Ravi
> 
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Peter Dalgaard, Professor,
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