[Rd] problem with R CMD check
Therneau, Terry M., Ph.D.
therne@u @end|ng |rom m@yo@edu
Fri Aug 23 20:19:08 CEST 2019
For a new release of survival, I normally run R CMD check for every one of the packages
that depend on survival (forewarned is forearmed).
I updated R-devel on the test machine this morning, and R CMD check --as-cran
survival_3.0-9.tar.gz works as desired.
When I run the check routine on any other source file, however, downloaded from CRAN, it
fails nearly immediately with a message like the following.
* installing *source* package ‘addhazard’ ...
** package ‘addhazard’ successfully unpacked and MD5 sums checked
** using staged installation
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
==5550==ASan runtime does not come first in initial library list; you should eit
her link runtime to your application or manually preload it with LD_PRELOAD.
ERROR: lazy loading failed for package ‘addhazard’
Here is my Makevars file. (The commented out lines are from an earlier date when I did
use ASAN to find a memory leak.)
CFLAGS= -g -O2 -Wall -pedantic -mtune=native
# Use the lines below for ASAN code
#CC= gcc -std=gnu99 -fsanitize=address -fno-omit-frame-pointer
#CFLAGS= -fno-omit-frame-pointer -g -O2 -Wall -pedantic -mtune=native
#CXX = g++ -fsanitize=address -fno-omit-frame-pointer
Any hints? If all packages failed I would figure I had a global mistake, but why most?
R Under development (unstable) (2019-08-23 r77061)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS
Matrix products: default
 LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
 LC_TIME=en_US.UTF-8 LC_COLLATE=C
 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
 LC_PAPER=en_US.UTF-8 LC_NAME=C
 LC_ADDRESS=C LC_TELEPHONE=C
 LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
 stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[[alternative HTML version deleted]]
More information about the R-devel