R-beta: Version 0.49 Released
Ross Ihaka
ihaka at stat.auckland.ac.nz
Wed Apr 23 11:25:23 CEST 1997
The newest version of R for Unix (version 0.49) is now available
(or soon will be) from the following sites.
NORTH AMERICA:
http://lib.stat.cmu.edu/R/Alpha
EUROPE:
ftp://ftp.stat.math.ethz.ch/R/
ftp://statlab.uni-heidelberg.de/pub/mirrors/auckland/R/
JAPAN:
ftp://ftp.u-aizu.ac.jp/pub/lang/R/
NEW ZEALAND:
ftp://stat.auckland.ac.nz/pub/R/
Please obtain a copy from site close to you. Note that New Zealand
is not close to anywhere other than itself :-).
This version adds considerable functionality and (we hope) stability
to R. Most notably, the object system is now very close to that
of S and we now have a fairly full implementation of complex
arithmetic.
The jump in version number (from 0.16) relects the fact that we
feel that this version of R represents quite a jump toward what we
hope will be in our eventual 1.0 release. However the version is
numbered 0.49 rather than the 0.50 we touted because it falls a
little short of what we really want for 0.50.
Immediate development of R will focus on creating a coherent way
of loading and unloading "libraries" and creating a good framework
for documentation (can you say "SGML" - I knew you could).
A (partial) list of changes from 0.16.1 follows. A list of known
problems is kept in the file "TASKS" in the distribution and a list
of problems we think are solved is in "TASKS.OLD"
R + R
-------------------------------------------------------------------
CHANGES IN VERSION R VERSION 0.49 ALPHA
NEW FEATURES
o The ``object'' system has been changed substantially. The
behavior of both "UseMethod" and "NextMethod" should match that
in S. Group methods for "Math", "Ops" and "Summary" are
available.
o Complex arithmetic is now implemented. Many mathematical
functions are now defined for complex arguments (e.g. sqrt,
exp, log, sin, cos, tan, asin, acos, atan). There is no
complex gamma function or log gamma function yet. The summary
functions "mean", "sum", "prod", "cumsum" and "cumprod" work
correctly when (some of) their arguments are complex. Other
functions such as "solve" are not "complex aware" yet, but do
print warning messages about coercion of complex values
to real by the dropping of imaginary parts.
S and R do not return identical results in all cases:
S> atan(tan(1i))
[1] 0-1i
R> atan(tan(1i))
[1] 0+1i
[ Is this just a difference on the branch cut boundary? ]
o The full set of S graphics symbols is now available with pch=0:18.
In addition, there is a special set of R plotting symbols which
can be obtained with pch=29:25.
pch=19 solid circle
pch=20 bullet
pch=21 circle
pch=22 square
pch=23 diamond
pch=24 triangle point-up
pch=25 triangle point down
The symbols 21:25 can be colored and filled with different colors.
For example, the expression
points(x, y, pch=21, col="red", bg="yellow")
will plot the points using a symbol consisting of a red circle with
a yellow interior.
o There is a new "family" argument to the postscript graphics driver
which can be set to any of "AvantGarde", "Bookman", "Courier",
"Helvetica", "Helvetica-Narrow", "NewCenturySchoolbook", "Palatino"
or "Times". In addition, setting font=5 will cause the "Symbol"
family to be used. This is still experimental and it is hard to
see it being useful without some sort of math capability.
[ Such a facility is "on the drawing board". ]
o The graphics parameter "las" is now implemented and can be used
to rotate axis labels. E.g. plot(1:10, las=1) .
o The hyperbolic and inverse hyperbolic functions cosh, sinh, tanh,
acosh, asinh and atanh are now implemented for both real and complex
arguments. (Q: are the underlying functions available on all
platforms, or do we need compatibility fixes?)
o "log" has changed so that it will accept an optional "base" argument.
"log2" and "log10" are implemented this way.
o "atan" can now either be invoked as atan(x) or atan(x,y).
o The behavior of "fft" has been modified to match that of S
(i.e. it returns a complex value. There is also a function
"mvfft" which performs a "vector transform" when passed a matrix
(i.e. it applies the fft to each column, rather than doing a
2d spatial transform).
o A new functon "polyroot" can be used to find the roots of
polynomials with (real or) complex coefficients.
o Vectors and lists are now "stretchy". This means that the
following is legal
x <- 1:10
x[20] <- 12
[ Note that there is a bug in S. When you try this kind of
extension - the "dim" and "dimname" attributes are not dropped,
leading to "invisible" elements in the result. ]
o Symbolic differention is now available using the functions "D"
and "deriv". The results are slightly difference in appearance
from those of S (which tends to put in a few too many parentheses),
but should provide identical semantics. To see the nature of the
difference, try the expression
D(expression(tan(x)/x^2),"x")
in both systems.
These functions are implemented as internal code in R (what's the
point in having a nice little underlying lisp if you don't use it
for obvious list processing applications?).
o A new function "grep" has been implemented. It performs regular
expression matching based on POSIX 1003.3. The function uses the
"regex" library written by Henry Spencer (the same one that Perl
uses). Grep is now used to provide a pattern matching facility
in "objects" and "ls". In addition, there are functions "sub"
and "gsub" which operate the same way as those in "nawk". Note
that "\" must be escaped to get it into a string, so if you want
a literal "\" you must type "\\\\" :-(.
o A new "methods" function written by Martin Maechler replaces the
older less sophisticated one. This has also been converted to use
the new "grep" function.
o A new version of model.frame from Thomas Lumley is included.
o Factors and ordered factors are now "objects" with class attributes
which match those in S. This change is primarily so that applications
written for S will work in R. The underlying implementation for
factors and ordered factors still uses special underlying types.
o R will now do conditioning plots as described in the S "Models" book.
Some thought is going into "doing trellis".
o Thomas Lumley's "require" and "provide" functions for library
organization added.
o There is a new graphical parameter "gamma" which is designed to
let users apply a ``gamma'' correction for their graphics
displays. Most monitors produce a color intensity which is
related to voltage by the equation
intensity = voltage ^ gamma
with gamma about 2.5 for most PC monitors. A typical symptom
of this non-linearity is that a colorwheel produced by
piechart(rep(1,48), col=48)
shows a marked over representation of the red, green and blue
and blue primaries. If this is the case try
par(gamma=1/2.5)
and redraw the color wheel. Vary gamma till you have a "nice"
spectrum. This is experimental and feedback would be welcome.
(If this is useful we will do the same for postscript).
BUG FIXES & ENHANCEMENTS
o The internals of the postscript device drivers have been rewritten
in preparation for "doing equations". The Adobe font metrics
are no longer processed during the build process. The original
files are now processed directly by the driver. The postscript
emitted by the drivers should conform to the Adobe 3.0 standard.
o Typos and logic errors in "crossprod" pointed out by Arne Kovac
have been fixed.
o "round" now works using IEEE rounding on platforms which support it.
E.g.
> round(.5 + -3:7)
[1] -2 -2 0 0 2 2 4 4 6 6 8
o A change to the PostScript graphics device driver change should
stop plots from rotating unexpectedly when viewed with ghostview
and other postscript viewers.
o Patches from Kurt Hornik for "structure" and "help" have been applied.
o "names" applied to 1-d arrays now does the "right thing" i.e. it
returns the first component of the "dimnames" attribute rather than
NULL. Subsetting a 1-d array as a vector will produce a "names"
attribute on the result.
o "atan" will now accept either 1 or 2 arguments ("atan2" still exists).
o "nchar" and "format" preserve "dim" and "dimname" attributes where
possible.
o There were problems with arguments in "switch". These have been
fixed. There appears to be a bug in S with the expression
z <- switch(1, a=, b=10, 20)
mode(z)
They appear to return a "missing argument". We die with an error
message. What is the right thing to do here?
o Problems deparsing arguments of the form "a"= and a=, have been fixed.
o The default graphics line width is now 1 rather than 0.
o "as.is" problem in "read.table" pointed out by Peter Dalgaard fixed.
o paste(list(character(0),""), 1:2) no longer causes a segfault.
"as.character" applied to a list now returns the vector obtained
by deparsing each element of the list.
o "attach" now attaches objects at pos=2 when directed.
o Memory usage was measured in 1000 byte chunks with the -v flag.
This has been changed to 1024 byte chunks.
o Dependency on the "OSF sprintf bug" has been removed.
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