[R] [?] update.packages() - Linux
Francisco Cribari
cribari at de.ufpe.br
Wed Mar 7 13:56:17 CET 2001
I am running R 1.2.1 under Mandrake Linux 7.2 (installed from RPM)
and I installed a few packages using install.packages() . Now, I
am trying to upgrade these packages using update.packages() but I
believe I am running into some kind of error. See below. Any tips
will be greatly welcome. Thanks in advance. Francisco
PS: update.packages() only tries to update wle from version 0.3
to 0.4, gives me an error message at the end, and
installed.packages() continues to list version 0.3 as the installed
version. I ran install.packages("package-name") as root, and am
running update.packages() as root. I must be missing something
simple.
-----------------------------------------------------------------
[root at edgeworth cribari]# R
R : Copyright 2001, The R Development Core Team
Version 1.2.1 (2001-01-15)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type `license()' or `licence()' for distribution details.
R is a collaborative project with many contributors.
Type `contributors()' for more information.
Type `demo()' for some demos, `help()' for on-line help, or
`help.start()' for a HTML browser interface to help.
Type `q()' to quit R.
> installed.packages()
Package LibPath Version Priority Bundle Depends
[1,] "base" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[2,] "ctest" "/usr/lib/R/library" "1.2.1" "base" "NA" ""
[3,] "eda" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[4,] "ineq" "/usr/lib/R/library" "0.1-2" "NA" "NA" "NA"
[5,] "KernSmooth" "/usr/lib/R/library" "2.22-4" "NA" "NA" "NA"
[6,] "lmtest" "/usr/lib/R/library" "0.1-9" "NA" "NA" ""
[7,] "lqs" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[8,] "modreg" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[9,] "mva" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[10,] "nls" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[11,] "quantreg" "/usr/lib/R/library" "3.01-1" "NA" "NA" "NA"
[12,] "splines" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[13,] "stepfun" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[14,] "tcltk" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[15,] "ts" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[16,] "wle" "/usr/lib/R/library" "0.3" "NA" "NA" "NA"
>update.packages()
--10:36:29-- http://cran.r-project.org:80/src/contrib/PACKAGES
=> `/tmp/fileR5148S327b23c6'
Connecting to cran.r-project.org:80... connected!
HTTP request sent, awaiting response... 200 OK
Length: 38,275 [text/plain]
0K .......... .......... .......... ....... 100% 0:00 9.06K
10:36:42 (8.85 KB/s) - `/tmp/fileR5148S327b23c6' saved [38275/38275]
wle :
Version 0.3 in /usr/lib/R/library
Version 0.4 on CRAN
Update (y/N)? y
--10:37:38-- http://cran.r-project.org:80/src/contrib/wle_0.4.tar.gz
=> `/tmp/RinstdirR5148S643c9869/wle_0.4.tar.gz'
Connecting to cran.r-project.org:80... connected!
HTTP request sent, awaiting response... 200 OK
Length: 131,087 [application/x-tar]
0K .......... .......... .......... .......... .......... 39% 1:21 978B
50K .......... .......... .......... .......... .......... 78% 0:18 1.56K
100K .......... .......... ........ 100% 0:00 869B
10:39:37 (1.08 KB/s) - `/tmp/RinstdirR5148S643c9869/wle_0.4.tar.gz' saved [131087/131087]
WARNING: ignoring environment value of R_HOME
/var/tmp/R-base-root/usr/lib/R/bin/Rcmd: /var/tmp/R-base-root/usr/lib/R/bin/Rcmd: No such file or directory
Delete downloaded files (y/N)? y
Warning message:
Installation of package wle had non-zero exit status in: install.packages(update[, "Package"], instlib, contriburl = contriburl,
>installed.packages()
Package LibPath Version Priority Bundle Depends
[1,] "base" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[2,] "ctest" "/usr/lib/R/library" "1.2.1" "base" "NA" ""
[3,] "eda" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[4,] "ineq" "/usr/lib/R/library" "0.1-2" "NA" "NA" "NA"
[5,] "KernSmooth" "/usr/lib/R/library" "2.22-4" "NA" "NA" "NA"
[6,] "lmtest" "/usr/lib/R/library" "0.1-9" "NA" "NA" ""
[7,] "lqs" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[8,] "modreg" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[9,] "mva" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[10,] "nls" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[11,] "quantreg" "/usr/lib/R/library" "3.01-1" "NA" "NA" "NA"
[12,] "splines" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[13,] "stepfun" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[14,] "tcltk" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[15,] "ts" "/usr/lib/R/library" "1.2.1" "base" "NA" "NA"
[16,] "wle" "/usr/lib/R/library" "0.3" "NA" "NA" "NA"
--
_ _
(o- Francisco Cribari-Neto -o)
//\ Dept. de Estatistica, Univ. Federal de Pernambuco /\\
.v_/_....................................................._\_v.
/ Phone: (+55-81) 3271-8420 Fax: (+55-81) 3271-8422 \
: Email: cribari at de.ufpe.br Web: www.de.ufpe.br/~cribari :
: :
: Linux: more Unix than Unix. http://www.linux.org :
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