[R] gene ontology association

[Robert Gentleman]

On Mon, Dec 02, 2002 at 03:34:02PM +0100, AlessandroSemeria at cramont.it wrote:
> Hello! I don't know if there is some R-package able
> to associate  ontology  to a long list of UniGene Name (a txt-tab file or
> an XML file), or
> if the best way is a Perl script.
> Some suggestion? Thanks!

 It depends on where the UniGene names come from and whether we have
 already done a mapping (for example if they were from some commonly
 used Affymetrix chips then it would be relatively easy). If not, you
 need to do the mapping - what is easiest depends on what you know,
 for me R is usually easier than Perl for many others it goes the
 other way...but really, you need to be a bit more specific about what
 you are trying to do if you want anyone to help you.


> 
> A. S.
> 
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> R-help at stat.math.ethz.ch mailing list
> http://www.stat.math.ethz.ch/mailman/listinfo/r-help

-- 
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| Robert Gentleman                 phone : (617) 632-5250                   |
| Associate Professor              fax:   (617)  632-2444                   |
| Department of Biostatistics      office: M1B20
| Harvard School of Public Health  email: rgentlem at jimmy.dfci.harvard.edu   |
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