[R] Using R for microarrays datas analysis by Mixed model ANOVA. lme function.

[Spencer Graves]

1.  Have you consulted Pinhiero and Bates (2000) Mixed-Effects Models in 
S and S-Plus (Springer)?  This is the standard (almost indispensible) 
reference on "lme".

2.  Are you familiar with the Bioconductor project 
(www.bioconductor.org)?  The have a substantial library of software for 
analyzing microarray data.

hope this helps.  spencer graves

Daphne Autran wrote:
> Hi, 
> We are using R to analyse microarrays datas by ANOVA.
> We would like to set up Mixed Model analysis, using the "lme" function
> within the nmle package.
> However, we have problem in understanding and getting the right formula to
> build a "groupedData" object which appear to be required for lme to work.
> I ve read all the available nmle package s Users guides and manuals, but
> explications are scarce.
> 
> Does anybody have an experience in using this function for microarrays datas
> analysis and could send me informations or, if possible, a resolved exemple
> (input table of datas, formula of the model, ouput...) ?
> 
> Maybe other R functions are usefull and easier to implement Mixed Models
> ANOVA for microarrays analysis, any suggestions ?
> 
> I thank you in advance for your reply.
> Sincerely 
> 
> Daphne Autran 
> 
> 
>     
> 
>     Dr Daphne Autran
> 
>     Laboratory of Reproductive Development and Apomixis
>     Department of Genetic Ingeniering
>     CINVESTAV - Unidad Irapuato
>     Km 9,6 Libramiento Norte
>     A.P.629 
>     C.P. 36500 Irapuato Guanajuato
>     MEXICO 
>     
>     Tel : (0052) 462 623 9600 ext.404
>     Fax : (0052) 462 624 5849
>     Email : dautran at ira.cinvestav.mx
> 
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