[R] Rd.sty error
Ingmar Visser
i.visser at uva.nl
Wed May 4 00:08:25 CEST 2005
Dear Prof Ripley,
The problem is this:
I create a package with a vignette which also includes some of the help
files from the package. These are \input'ed into the vignette (after
generating them with Rdconv -t=latex. After running sweave, I get the
package-manual.tex file which runs succesfully through my tex application
(texshop is a mac os x tex gui that uses tetex), albeit with \batchmode on
to catch the error described below.
The package successfully passes R CMD check. However, when I subsequently R
CMD build the package I get the following message:
* creating vignettes ... ERROR
/Library/Frameworks/R.framework/Resources/bin/texi2dvi: pdflatex exited with
bad status, quitting.
/Library/Frameworks/R.framework/Resources/bin/texi2dvi: see
depmix-manual.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on depmix-manual.tex failed
Execution halted
> version
_
platform powerpc-apple-darwin6.8
arch powerpc
os darwin6.8
system powerpc, darwin6.8
status
major 2
minor 0.1
year 2004
month 11
day 15
language R
The error I described earlier appears after this line:
/usr/local/teTeX/share/texmf.tetex/tex/latex/url/url.sty
This error does not occur when I comment out \usepackage{Rd}, although then
of course many other errors occur such as \code and \pkg being undefined.
Any hints as to where to go from here are very welcome!
best, ingmar
The depmix-manual.log reads as follows:
This is pdfeTeX, Version 3.141592-1.20a-2.2 (Web2C 7.5.3) (format=pdflatex
2004.11.26) 3 MAY 2005 17:17
entering extended mode
**\nonstopmode \input
/Users/ivisser/Documents/Projects/HMM/depmixprog/depmix/i
nst/doc/depmix-manual.tex
(/Users/ivisser/Documents/Projects/HMM/depmixprog/depmix/inst/doc/depmix-man
ual
.tex (/usr/local/teTeX/share/texmf.tetex/tex/latex/base/report.cls
Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
(/usr/local/teTeX/share/texmf.tetex/tex/latex/base/size10.clo
File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option)
)
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Package: amsmath 2000/07/18 v2.13 AMS math features
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! LaTeX Error: Command \bold already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
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[1
]
Chapter 1.
[2
]
Chapter 2.
<graphs/depmix-003.pdf, id=47, 433.62pt x 433.62pt>
File: graphs/depmix-003.pdf Graphic file (type pdf)
<use graphs/depmix-003.pdf> [3
] [4 <./graphs/depmix-003.pdf>] [5] [6] [7] [8]
Chapter 3.
[9
] (./markovdata.tex
Overfull \hbox (102.57996pt too wide) in paragraph at lines 20--20
[] \T1/aett/m/n/10
markovdata(dat,itemtypes,nitems=length(itemtypes),nt
imes=length(as.matrix(dat))/nitems,[]
[]
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[10] [11]) (./rudy.tex [12]) [13] [14] <graphs/depmix-009.pdf, id=126,
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x 433.62pt>
File: graphs/depmix-009.pdf Graphic file (type pdf)
<use graphs/depmix-009.pdf> (./generate.tex [15] [16
<./graphs/depmix-009.pdf>]
) [17] [18] [19]
Chapter 4.
[20
] [21] [22] [23] [24] (./mgdmm.tex [25]) [26] [27] [28]
Chapter 5.
(./mixdmm.tex [29
] [30]) [31]
Appendix A.
(./dmm.tex
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\T1/aer/m/n/10 higher num-bers for pos-si-bly equal-ity con-strained
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[34]
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[]\T1/aer/m/n/10 The num-ber of freely es-ti-mated pa-ram-e-ters (it is
com-put
ed as sum(as.logical(fixed))-
[]
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[]
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[]\T1/aer/m/n/10 The ma-trix A con-tains the gen-eral lin-ear con-straints
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he model. nrow(A)
[]
[35]) (./fitdmm.tex [36] [37] [38]
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[]\T1/aett/m/n/9 # add covariates to the model to incorporate the fact the
acc
uracy pay off changes per trial[]
[]
[39]
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[]\T1/aett/m/n/9
mod<-dmm(nstates=2,itemt=c("n",2),stval=stv,conpat=conpat,tdf
ix=tdfix,tdst=stcov,modname="twoboth+cov")[]
[]
[40]) [41]
Appendix B.
(./mbd.tex) (./mdall.tex [42
]) (./rain.tex [43]) (./depmix-manual.bbl [44]) [45
] (./depmix-manual.aux) )
Here is how much of TeX's memory you used:
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fonts/type1/bluesky/cm/cmmi10.pfb></usr/local/teTeX/share/texmf.tetex/fonts/
typ
e1/bluesky/cm/cmbx12.pfb></usr/local/teTeX/share/texmf.tetex/fonts/type1/blu
esk
y/cm/cmtt10.pfb></usr/local/teTeX/share/texmf.tetex/fonts/type1/bluesky/cm/c
mr1
0.pfb></usr/local/teTeX/share/texmf.tetex/fonts/type1/bluesky/cm/cmb10.pfb><
/us
r/local/teTeX/share/texmf.tetex/fonts/type1/bluesky/cm/cmbx10.pfb></usr/loca
l/t
eTeX/share/texmf.tetex/fonts/type1/bluesky/cm/cmr9.pfb></usr/local/teTeX/sha
re/
texmf.tetex/fonts/type1/bluesky/cm/cmr6.pfb></usr/local/teTeX/share/texmf.te
tex
/fonts/type1/bluesky/cm/cmr8.pfb></usr/local/teTeX/share/texmf.tetex/fonts/t
ype
1/bluesky/cm/cmr12.pfb></usr/local/teTeX/share/texmf.tetex/fonts/type1/blues
ky/
cm/cmr17.pfb>
Output written on depmix-manual.pdf (47 pages, 270051 bytes).
On 5/3/05 2:52 PM, "Prof Brian Ripley" <ripley at stats.ox.ac.uk> wrote:
> I don't see an error message here.
> And what is `texShop'?
>
> I think we need (a lot) more details of what you actually are doing.
>
> On Tue, 3 May 2005, Ingmar Visser wrote:
>
>> I had written a vignette and included a
>> \usepackage{Rd} command to make it possible to include
>> latex'ed Rd files in the vignette. However, when loading
>> Rd.sty texShop produces the following error:
>>
>> l. 180 ...d}[1]{\ifmmode\bm{#1}\else\textbf{#1}\fi}
>>
>> This is on Max OS X 3.9 and R 2.0.1
>>
>> Has anyone seen this before and/or is it problematic? I'm not sure whether
>> the output suffers from this but it does create a problem with R CMD check
>> because tex produces a warning/error there.
--
Ingmar Visser
Department of Psychology, University of Amsterdam
Roetersstraat 15, 1018 WB Amsterdam
The Netherlands
http://users.fmg.uva.nl/ivisser/
tel: +31-20-5256735
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