[R] RES: RdbiPgSQL in R 2.4.1

[Eduardo Dutra de Armas]

Hi Seth
I'm running R on WinXP. On the first time I've installed Rdbi and RdbiPgSQL
from zip files not downloaded from Bioconductor. No problems during
installation.
Now I tried to install from biocLite and a message was showed for RdbiPgSQL.

> biocLite(c("Rdbi", "RdbiPgSQL"))
Running getBioC version 0.1.8 with R version 2.4.1
Running biocinstall version 1.9.9 with R version 2.4.1
Your version of R requires version 1.9 of Bioconductor.
Dependency ''RdbiPgSQL'' is not available
...

I gave a look at Bioconductor site, where I saw an Error report during
checking of BioC 1.9/RdbiPgSQL for Windows Server 2003. The same was
reported for another BioC releases.
Conclusion: Isn't possible access postgreSQL databases from R?

Thanks


-----Mensagem original-----
De: Seth Falcon [mailto:sfalcon at fhcrc.org] 
Enviada em: segunda-feira, 5 de fevereiro de 2007 15:07
Para: Eduardo Dutra de Armas
Cc: r-help at stat.math.ethz.ch
Assunto: Re: [R] RdbiPgSQL in R 2.4.1

Hi Eduardo,

It would probably be best to send question regarding Bioconductor
packages to the bioconductor email list.

"Eduardo Dutra de Armas" <eduarmasrs at yahoo.com.br> writes:

> Hi R-users
>
> I recently downloaded RdbiPgSQL 1.8.0 and Rdbi 1.8.0 from Bioconductor to
be
> installed under R 2.4.1.
>
> When requiring RdbiPgSQL an error message is showed as follows:
>
>  
>
>> require(RdbiPgSQL)
>
> Loading required package: RdbiPgSQL
>
> Error in library(package, lib.loc = lib.loc, character.only = TRUE,
logical
> = TRUE,   :
>
>              RdbiPgSQL is not a valid package  installed < 2.0.0?
>
>  
>
> There is no issue about version restriction in Description file.

What OS are you running on?  How did you install the packages?  I'm
not able to reproduce the message you posted.

Perhaps try reinstalling using the biocLite install script.  Like
this:

    source("http://bioconductor.org/biocLite.R")
    biocLite(c("Rdbi", "RdbiPgSQL))

NB: normally, you don't need to specify dependencies, but this way it
will reinstall Rdbi as well in case you have a bogus install...

+ seth

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14:04
 

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