[R] sample() and memory usage
victor.gravenholt at gmail.com
Tue May 8 12:01:30 CEST 2007
As a part of a simulation, I need to sample from a large vector repeatedly.
For some reason sample() builds up the memory usage (> 500 MB for this
example) when used inside a for loop as illustrated here:
X <- 1:100000
P <- runif(100000)
for(i in 1:500) Xsamp <- sample(X,30000,replace=TRUE,prob=P)
Even worse, I am not able to free up memory without quitting R.
I quickly run out of memory when trying to perform the simulation. Is
there any way to avoid this to happen?
The problem seem to appear only when specifying replace=TRUE and
probability weights for the vector being sampled, and this happens both
on Windows XP and Linux (Ubuntu).
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