[R] Venn diagram

Earl F. Glynn efg at stowers-institute.org
Thu May 31 17:30:20 CEST 2007


I'm not sure where you're getting the "venn" package. I don't find "venn" in 
either of these places:

- http://cran.r-project.org/src/contrib/PACKAGES.html
- http://www.bioconductor.org/packages/release/Software.html

In case this helps, here are some notes about creating Venn Diagrams using 
the limma package:
http://research.stowers-institute.org/efg/R/Math/VennDiagram.htm

efg
Stowers Institute for Medical Research


"Nina Hubner" <nina.hubner at web.de> wrote in message 
news:loom.20070531T115942-677 at post.gmane.org...
> Hello,
>
>
>
> I am a total beginner with "R" and found a package "venn" to
> create a venn diagram.
>
> The problem is, I cannot create the vectors required for the diagram.
>
> The manual say:
> "R> venn(accession, libname, main = "All samples")
> where accession was a vector containing the codes identifying
> the RNA sequences, and libname was a vector containing the codes
> identifying the tissue sample (library)."
>
>
> The structure of my data is as follows:
>
>
>
> R>   structure(list(cyto = c("A", "B", "C", "D"), nuc = c("A", "B", "E", 
> ""),
> chrom = c("B", "F", "", "")),.Names = c("cyto", "Nuc", "chrom"))
>
>
> accession should be "A", "B",.... and libname schould be "cyto",
> "nuc" and "chrom" as I understand it...
>
>
> Could you help me?
>
>
>
> Sorry, that might be a very simple question, but I am a total beginner
> as said before! The question has already been asked, but unfortunately
> there was no answer...
>
>
>
> Thank you a lot,
>
> Nina Hubner
>
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