[R] odfWeave produces output file that OO can't open

[Michael Kubovy]

Dear R-helpers,

I'm trying to learn how to use odfSweave.

Here is my source file (in /Users/mk/myTeach/2010-1-7720/odfWeave):
****************************************
Analysis of the iris Data

Created on \Sexpr{date()}

<<loadLibs, echo = FALSE, results = hide>>=
# I usually load the libraries first so that any output produced by loading the library does not end up in the document
library(MASS)
library(lattice)
library(grid)
data(iris)
@

This famous (Fisher's or Anderson's) iris data set gives the measurements in centimeters of the variables sepal length and width and petal length and width, respectively, for \Sexpr{dim(iris)[1]/3} flowers from each of \Sexpr{length(levels(iris$Species))} species of iris. The species are \Sexpr{paste(levels(iris$Species), collapse = ", ")}.

Here is a bulleted list of the species:
<<showOutputList, echo = FALSE, results = xml>>=
odfItemize(levels(iris$Species))
@
****************************************

With
****************************************
R version 2.10.0 (2009-10-26) 
x86_64-apple-darwin9.8.0 
locale:
[1] C/C/en_US/C/C/C
attached base packages:
[1] grid      stats     graphics  grDevices datasets  utils     methods  
[8] base     
other attached packages:
[1] MASS_7.3-4      odfWeave_0.7.10 XML_2.6-0       lattice_0.17-26
[5] JGR_1.7-0       iplots_1.1-3    JavaGD_0.5-2    rJava_0.8-1    
loaded via a namespace (and not attached):
[1] Matrix_0.999375-32 lme4_0.999375-32   tools_2.10.0      
****************************************
I run:
****************************************
> odfWeave('simple1.odt','simpleOut.odt')
  Copying  simple1.odt 
  Setting wd to  /var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmplOpSLO/odfWeave13103539684 
  Unzipping ODF file using unzip -o simple1.odt 

  Removing  simple1.odt 
  Creating a Pictures directory

  Pre-processing the contents
  Sweaving  content.Rnw 

  Writing to file content_1.xml
  Processing code chunks ...
    1 : term hide(label=loadLibs)
    2 : term xml(label=showOutputList)

  'content_1.xml' has been Sweaved

  Removing content.xml

  Post-processing the contents
  Removing content.Rnw 
  Removing styles.xml
  Renaming styles_2.xml to styles.xml
  Removing extra files

  Packaging file using zip -r simple1.odt . 
  Copying  simple1.odt 
  Resetting wd
  Removing  /var/folders/TG/TG6nWu2pHYCI-BdWWiyMxU+++TI/-Tmp-//RtmplOpSLO/odfWeave13103539684 

  Done
Warning message:
closing unused connection 3 (content.xml) 
****************************************

When I try to open simpleOut.odt I get: "Format error discovered in the file in sub-document content.xml at 22,124(row,col)." The file content.xml is empty.




______________________________________________
Professor Michael Kubovy
University of Virginia
Department of Psychology
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