[R] SOLVED: loading lme4 fails - "function 'cholmod_l_start' not provided by package 'Matrix'"
Megan Davies
Megan.Davies at snh.gov.uk
Wed Feb 4 14:22:32 CET 2009
Thanks Thierry and the Prof,
Removing the files and then reloading them seems to have done the trick. I don't understand why it worked, but it did.
Megan
Megan Davies
Policy and Advice Officer, Statistician
Scottish Natural Heritage
01463 725072
>>> "ONKELINX, Thierry" <Thierry.ONKELINX at inbo.be> 04-02-2009 12:40 >>>
Megan,
Try to uninstall both packages, remove them from the harddrive and then
reinstall them. That worked for me when I had a similar problem (lme4
complaining about Matrix).
HTH,
Thierry
------------------------------------------------------------------------
----
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature
and Forest
Cel biometrie, methodologie en kwaliteitszorg / Section biometrics,
methodology and quality assurance
Gaverstraat 4
9500 Geraardsbergen
Belgium
tel. + 32 54/436 185
Thierry.Onkelinx at inbo.be
www.inbo.be
To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to
say what the experiment died of.
~ Sir Ronald Aylmer Fisher
The plural of anecdote is not data.
~ Roger Brinner
The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of
data.
~ John Tukey
-----Oorspronkelijk bericht-----
Van: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org]
Namens Megan Davies
Verzonden: woensdag 4 februari 2009 12:49
Aan: Prof Brian Ripley
CC: r-help at r-project.org
Onderwerp: Re: [R] loading lme4 fails - "function 'cholmod_l_start'not
providedbypackage 'Matrix'"
Thanks again Prof,
I downloaded the latest lme4 today. In the description file, it says,
"Version: 0.999375-28". I've just checked this against the version
available on CRAN and its the same.
Megan
Megan Davies
Policy and Advice Officer, Statistician
Scottish Natural Heritage
01463 725072
>>> Prof Brian Ripley <ripley at stats.ox.ac.uk> 04-02-2009 11:42 >>>
On Wed, 4 Feb 2009, Megan Davies wrote:
> Thanks Prof,
>
> As you can see from my session information (below), I appear to be
> using the same version of Matrix as yourself. However, I also
> notice that you're using a patched version of 2.8.1 whereas I'm not.
> Could this be the difference?
It should not, and I just checked the original 2.8.1 to be sure.
>
> sessionInfo()
>
> R version 2.8.1 (2008-12-22)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] Matrix_0.999375-20 lattice_0.17-20
But we don't have the lme4 version, so please re-check that.
>
> loaded via a namespace (and not attached):
> [1] grid_2.8.1 tools_2.8.1
>
> Megan
>
> Megan Davies
> Policy and Advice Officer, Statistician
> Scottish Natural Heritage
> 01463 725072
>
>>>> Prof Brian Ripley <ripley at stats.ox.ac.uk> 04-02-2009 11:13 >>>
> Did you update your version of Matrix? It should be 0.99375-20 (or
> perhaps -18). E.g. for me
>
>> sessionInfo()
> R version 2.8.1 Patched (2009-02-04 r47838)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
> Kingdom.1252;LC_MONETARY=English_United
> Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
>
> other attached packages:
> [1] lme4_0.999375-28 Matrix_0.999375-20 lattice_0.17-20
>
> loaded via a namespace (and not attached):
> [1] grid_2.8.1 tools_2.8.1
>
> worked.
>
> R 2.9.0 will check versions when loading a package, but 2.8.1 does
> not.
>
>
> On Wed, 4 Feb 2009, Megan Davies wrote:
>
>> Hello UseRs,
>>
>> I've just tried to load the lme4 package and got the error message,
>> "function 'cholmod_l_start' not provided by package 'Matrix'". I
>> downloaded the latest version of lme4 and its required packages
>> (lattice and Matrix) as suggested in the archives and still got this
>> message. The FAQ and archives suggested to check the R version
>
> and also the package version requirements.
>
>> requirements, but I'm already using the latest available version of
>> R, 2.8.1. I'm using Windows XP Professional.
>
>>
>> Thanks for any help,
>> Megan Davies
>>
>> Megan Davies
>> Policy and Advice Officer, Statistician
>> Scottish Natural Heritage
>> 01463 725072
>
> --
> Brian D. Ripley, ripley at stats.ox.ac.uk
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
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--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
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