[R] odfWeave: odt-file damaged

[ukoenig at med.uni-marburg.de]

Dear all,
I am doing my first steps with odfWeave.

After running the r code (see below), I am trying to open the ODF-document
with open office, but I am getting the error message:

"The file is damaged, but it can be repaired". If I confirm the question and
repair the file with open office, I can open it with the desired output,
which seems to be fine.

My system:
     R Version 2.9.1
     Open Office 3.0.1
     7-Zip 4.65
     Windows XP

Using zip (http://www.info-zip.org/, zip232xN.zip) had the same result.

What causes the error message?  Is the structure of the ODF document
as it should be (for the structure please have a look at the bottom of
this mail)?

I'd greatly appreciate any help.


Udo K o e n i g

Clinic for Child and Adolescent Psychiatry
Philipps University of Marburg, Germany


#######################################################################
#R code
library(odfWeave)

#odfWeave call
odfWeave("c:/temp/odfWeave-test.odt", "c:/temp/odfWeave-test-out.odt",
           control=odfWeaveControl(zipCmd = c("7z a -tzip $$file$$ .",
           "7z e -tzip $$file$$")))

#######################################################################
# Contents of my Open office document

<<Initiate, results = hide, echo= FALSE>>=
#First steps with odfWeave
attach(iris)
@

There are \Sexpr{length(iris[, 1])} observations.

<<Table, echo=FALSE, results= xml>>=
odfTable(iris[1:5,])
@

<<Table2, echo=FALSE, results= xml>>=
tab <- round(apply(iris[, 1:4], 2, mean), 2)
odfTable(tab, horizontal= TRUE)
@

<<Boxplot, echo=FALSE, fig=TRUE>>=
boxplot(Sepal.Length~Species)
@

#######################################################################
#Log

> odfWeave("c:/temp/odfWeave-test.odt", "c:/temp/odfWeave-test-out.odt",
+          control=odfWeaveControl(zipCmd = c("7z a -tzip $$file$$ .",
+          "7z e -tzip $$file$$")))
    Copying  c:/temp/odfWeave-test.odt
    Setting wd to
C:\DOCUME~1\Udo_2\LOCALS~1\Temp\Rtmp6QrXgk/odfWeave05190748330
    Unzipping ODF file using 7z e -tzip "odfWeave-test.odt"

7-Zip 4.65  Copyright (c) 1999-2009 Igor Pavlov  2009-02-03

Processing archive: odfWeave-test.odt

Extracting  mimetype
Extracting  Configurations2\statusbar
Extracting  Configurations2\accelerator\current.xml
Extracting  Configurations2\floater
Extracting  Configurations2\popupmenu
Extracting  Configurations2\progressbar
Extracting  Configurations2\menubar
Extracting  Configurations2\toolbar
Extracting  Configurations2\images\Bitmaps
Extracting  content.xml
Extracting  styles.xml
Extracting  meta.xml
Extracting  Thumbnails\thumbnail.png
Extracting  settings.xml
Extracting  META-INF\manifest.xml

Everything is Ok

Folders: 7
Files: 8
Size:       28518
Compressed: 8768

    Removing  odfWeave-test.odt
    Creating a Pictures directory

    Pre-processing the contents
    Sweaving  content.Rnw

    Writing to file content_1.xml
    Processing code chunks ...
      1 : term hide(label=Initiate)
      2 : term xml(label=Table)
      3 : term xml(label=Table2)
      4 : term verbatim(label=Boxplot)

    'content_1.xml' has been Sweaved

    Removing content.xml

    Post-processing the contents
    Removing content.Rnw
    Removing styles.xml
    Renaming styles_2.xml to styles.xml
    Removing extra files

    Packaging file using 7z a -tzip "odfWeave-test.odt" .

7-Zip 4.65  Copyright (c) 1999-2009 Igor Pavlov  2009-02-03
Scanning

Creating archive odfWeave-test.odt

Compressing  content.xml
Compressing  current.xml
Compressing  manifest.xml
Compressing  meta.xml
Compressing  mimetype
Compressing  Pictures\content_1-Boxplot.png
Compressing  settings.xml
Compressing  styles.xml
Compressing  thumbnail.png

Everything is Ok
    Copying  odfWeave-test.odt
    Resetting wd
    Removing  C:\DOCUME~1\Udo_2\LOCALS~1\Temp\Rtmp6QrXgk/odfWeave05190748330

    Done

#######################################################################
#Structure of the unzipped odf-document that produced the error message

05.07.2009  11:43    <DIR>          Bitmaps
05.07.2009  19:07            13.820 content.xml
05.07.2009  11:43                 0 current.xml
05.07.2009  11:43    <DIR>          floater
05.07.2009  11:43             1.889 manifest.xml
05.07.2009  11:43    <DIR>          menubar
05.07.2009  11:43               968 meta.xml
05.07.2009  11:43                39 mimetype
05.07.2009  22:18    <DIR>          Pictures
05.07.2009  11:43    <DIR>          popupmenu
05.07.2009  11:43    <DIR>          progressbar
05.07.2009  11:43             7.993 settings.xml
05.07.2009  11:43    <DIR>          statusbar
05.07.2009  19:07            13.281 styles.xml
05.07.2009  11:43             1.579 thumbnail.png
05.07.2009  11:43    <DIR>          toolbar