[R] [BioC] MatLab SimBiology

Dr. Sanjay Bhatikar sanjay.bhatikar at biobase-international.com
Wed Nov 4 10:43:48 CET 2009


The differential equations solvers (LSODA, etc.) used in Matlab are all 
available in R. You may need to set-up the equations yourself, from a 
format such as SBML. The capability is all there in R - maybe just not 
as nicely packaged and pre-digested as Matlab. If you access to 
programming resources, choose R.

Regards,
- Sanjay

mauede at alice.it wrote:
> Is there any R package that implements the same capability of MatLab toolbox called SimBiology ?
> We are expecially interested in protein-protein interactions and network analysis.
> As far as I know SimBiology implements a system of ODEs reflecting the kinetic chemical reactions.
> We would be more interested in stochastic simulations.
> Thank you in advance.
>
> Maura
>
>
> tutti i telefonini TIM!
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