[R] R commander.

[David Winsemius]

You seem to have gotten an extraneous list item called "Chromosome" to  
which an empty string has been assigned. What happens if you issue  
this command:

ann2 <- data.frame( Name=ann$Name, Position=ann$Position,  
Chr.num=factor(ann$Chr.num) )

(I took the liberty of making Chr.num into a factor.) And then print  
out smaller segments of ann2  (since what you have would take many  
hundreds of pages.

ann2[ , 1:60]


-- 
David

On Oct 12, 2009, at 2:29 AM, Ilyas . wrote:

> i have two RData files,,i want to print them to check the format of  
> the
> tables in these files,,,i can load both the files and can read it as  
> well
>
>> load('ann.RData')
>> str(ann)
> List of 4
> $ Name      : chr [1:561466] "rs3094315" "rs12562034" "rs3934834"
> "rs9442372" ...
> $ Position  : int [1:561466] 742429 758311 995669 1008567 1011278  
> 1011521
> 1020428 1021403 1038818 1039813 ...
> $ Chromosome: chr(0)
> $ Chr.num   : num [1:561466] 1 1 1 1 1 1 1 1 1 1 ...
>
> but when i try to display all the table by using the R commander.i  
> have got
> the display of 'pheno.RData' file,,but the other file 'ann.RData'  
> show me an
> error i.e.
>
>> ann <- as.data.frame(ann)
> Error in data.frame(Name = c("rs3094315", "rs12562034", "rs3934834",
> "rs9442372",  :
>  arguments imply differing number of rows: 561466, 0
>
>
>
> i am sending you both files,,,hope u will help me solve this  
> problm....
>
>
> Ilyas
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David Winsemius, MD
Heritage Laboratories
West Hartford, CT