[R] CRAN (and crantastic) updates this week

[Crantastic]

CRAN (and crantastic) updates this week

New packages
------------

* cumSeg (1.0)
  Vito M.R. Muggeo
  http://crantastic.org/packages/cumSeg

  Estimation of number and location of change points in mean-shift
  (piecewise constant) models. Particularly useful to model genomic
  sequences of continuous measurements.

* GWASExactHW (1.0)
  Ian Painter
  http://crantastic.org/packages/GWASExactHW

  This package contains a function to do exact Hardy-Weinburg testing
  (using Fisher's test) for SNP genotypes as typically obtained in a
  Genome Wide Association Study (GWAS).

* HapEstXXR (0.1-3)
  Sven Knueppel
  http://crantastic.org/packages/HapEstXXR

  Haplotype-Based Analysis of Association for genetic traits

* MatrixModels (0.1-1)
  Doug and Martin
  http://crantastic.org/packages/MatrixModels

  Modelling with sparse and dense 'Matrix' matrices, using modular
  prediction and response module classes.

* mhurdle (0.1-0)
  Yves Croissant
  http://crantastic.org/packages/mhurdle

  

* MSToolkit (2.0)
  MSToolkit
  http://crantastic.org/packages/MSToolkit

  MSToolkit library for evaluating clinical trial design and analysis
  operating characteristics through simulation.

* nnc (1.10)
  Unknown
  http://crantastic.org/packages/nnc

  Computes nearest neighbour autocovariates

* optimx (0.84)
  John C. Nash
  http://crantastic.org/packages/optimx

  Provides a replacement and extension of the optim() function to unify
  and streamline optimization capabilities in R for smooth, possibly
  box constrained functions of several or many parameters

* SlimPLS (0.3)
  Ofer Lavi
  http://crantastic.org/packages/SlimPLS

  SlimPLS is an implementation of SlimPLS multivariate feature
  selection.


Updated packages
----------------

benchmark (0.3-1), Bolstad (0.2-18), bqtl (1.0-26), caret (4.47),
cmprskContin (1.7), combinat (0.0-8), corpcor (1.5.7), DatABEL
(0.9-0), depmixS4 (1.0-0), dismo (0.5-4), diveMove (1.1), DoE.base
(0.12), DOSim (2.0), flexmix (2.2-8), Flury (0.1-3), FrF2 (1.1-4),
Geneclust (1.0.1), GPseq (0.2), hexView (0.3-2), HMR (0.2.1), igraph
(0.5.4), iid.test (1.6), IsoGene (1.0-17), kknn (1.0-8), lpSolve
(5.6.5), Matrix (0.999375-43), MSBVAR (0.5.0), optparse (0.9.0),
pamctdp (0.1.8), PerformanceAnalytics (1.0.3), pmml (1.2.23), rainbow
(2.1), rattle (2.5.38), RcppArmadillo (0.2.5), realized (1.0),
RExcelInstaller (3.1-6), RInside (0.2.3), RQuantLib (0.3.3), Runuran
(0.15.0), siar (4.0.1), spBayes (0.1-9), svcR (1.6.5), tau (0.0-8),
timereg (1.3-5), ttime (1.2.4), ttime (1.2.3), twang (1.0-2), UsingR
(0.1-13), vegetarian (1.2), wgaim (0.99-2), WMCapacity (0.9.5.1), xts
(0.7-4)



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