[R] Converting pdb to pqr

David Winsemius dwinsemius at comcast.net
Wed Feb 10 12:56:49 CET 2010


On Feb 10, 2010, at 1:02 AM, Amitoj S. Chopra wrote:

>
> There are websites using python to convert a pdb to a pqr. I was  
> wondering if
> there is a simpler way to do it. We have a protein in pdb format,  
> and want
> to convert that to a pqr file so that the program apbs can open it.  
> We want
> to accomplish this conversion in R. Thank you for your help.

 From context and the fact that apbs does not show up in a search, I  
am guessing that it is a BioC function and that you would be better  
off posting on the correct mailing list.

-- 
David.

>
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David Winsemius, MD
Heritage Laboratories
West Hartford, CT



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