[R] More than on loop??

[che]

70% yes, the problem is i am trying to produce a graph similar to the one in
attachments in this message, which represents the frequency of each letter
"aminoacid" in the cleaved function and the noncleaved function. some thing
else i added to the attachments is the pattern which seemingly working
correctly, i am trying now to create a R code to loop and simulate this
pattern in order to draw all rectangles for the eight columns. But i don't
know exactly how to deal with this variable which i highlighted with yellow
in the image, it is cumulative in a challenging way.   
http://n4.nabble.com/file/n1290048/cleaved.jpg cleaved.jpg 
http://n4.nabble.com/file/n1290048/pattern.jpg pattern.jpg 
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