[R] Is there any function to read genbank flat files.

Andrej andrej.kastrin at gmail.com
Wed Jun 16 18:22:38 CEST 2010


I think it's better to ask on Bioconductor mailing list.


On Jun 16, 6:19 pm, Fahim Md <fahim... at gmail.com> wrote:
> Hi
> I am trying to read genbank est flat files. Is there any function in R to do
> that. I was looking for something similar to SeqIO.parse(input_handle,
> "genbank")  in bioPython that convert the genebank sequence into fasta
> sequence.
> (One option is to call biopython from R but I am not familiar with python
> functions so I want to avoid that and I am keeping it as last resort)
> Thanks and regards.
> --Fahim
> --
> Fahim Mohammad
> Bioinforformatics Lab
> University of Louisville
> Louisville, KY, USA
> Ph:  +1-502-409-1167
>         [[alternative HTML version deleted]]
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