[R] doubt about samr siggenes.table$genes.up

Leonardo K shikida at gmail.com
Tue May 25 18:54:52 CEST 2010


Hi, here's my siggenes.table$genes.up snippet.

Two class unpaired SAMR analysis.

"Row" "Gene ID" "Gene Name" "Score(d)" "Numerator(r)" "Denominator(s+s0)"
"Fold Change" "q-value(%)"
"1" "25" "RPL15P22" "RPL15P22" "-1.44115338424578" "-18" "12.4899959967968"
"1.27368448239355" "0"
"2" "47" "CHAF1A" "CHAF1A" "-1.44115338424578" "-18" "12.4899959967968"
"1.30356683838951" "0"
"3" "48" "PARP2" "PARP2" "-1.44115338424578" "-18" "12.4899959967968"
"1.09780831177589" "0"
"4" "52" "HMGXB4" "HMGXB4" "-1.44115338424578" "-18" "12.4899959967968"
"1.22596090318945" "0"

Why do I get one column more in the data block (9) than the header (8)?

Looks like the second column (25,47,48,etc) does not make sense.

TIA

Leo
-- 
View this message in context: http://r.789695.n4.nabble.com/doubt-about-samr-siggenes-table-genes-up-tp2230343p2230343.html
Sent from the R help mailing list archive at Nabble.com.



More information about the R-help mailing list