[R] shorter way of coding
Sarah Goslee
sarah.goslee at gmail.com
Tue Dec 13 17:36:33 CET 2011
In exactly the same way:
y.gam <- lapply(y.list, function(y)gam(y~s(x1,x2, k=1))) # list of gam objects
y.vis.gam <- lapply(y.gam, vis.gam) # list of vis.gam outputs
y.fitted <- lapply(y.gam, fitted) # list of fitted values.
Saraj
On Tue, Dec 13, 2011 at 10:48 AM, Mintewab Bezabih
<Mintewab.Bezabih at economics.gu.se> wrote:
> Dear Sarah and R users,
>
> Thanks Sarah for the suggestion. The example you gave me works and I managed to get it to run by modifying the 'lm' to the gam command.
>
> y.list <- list(y1=runif(10), y2 <- runif(10), y3 <- runif(10))
> x1 <- 1:10
> x2 <- c(11, 15, 17, 2, 18, 6, 7, 8, 12, 10)
> lapply(y.list, function(y)gam(y~s(x1,x2, k=100)))
>
>
> I now face problem of getting the fitted results from the gam command. My original problem for only one y looked like this. Now how do I get to incorporate vis.gam(b) and fitted (b) into my new code?
>
> b<-gam(y~s(x1,x2,k=100),data=dat)
> vis.gam(b)
> fitted(b)
>
> Many thanks once again.
> Mintewab
> ________________________________________
> Från: Sarah Goslee [sarah.goslee at gmail.com]
> Skickat: den 12 december 2011 17:36
> Till: Mintewab Bezabih
> Kopia: r-help at r-project.org
> Ämne: Re: [R] shorter way of coding
>
> That's not a reproducible example. Paul suggested a list of formulas,
> but I recommended creating a list of y variables.
>
> In your attempt, you didn't include the y in the name of the dependent
> variable; that's probably why it doesn't work.
>
> Look at this:
>
>> y.list <- list(y1=runif(10), y2 <- runif(10), y3 <- runif(10))
>> x1 <- 1:10
>> lapply(y.list, function(y)lm(y ~ x1))
> $y1
>
> Call:
> lm(formula = y ~ x1)
>
> Coefficients:
> (Intercept) x1
> 0.56392 -0.02586
>
>
> [[2]]
>
> Call:
> lm(formula = y ~ x1)
>
> Coefficients:
> (Intercept) x1
> 0.66375 -0.03519
>
>
> [[3]]
>
> Call:
> lm(formula = y ~ x1)
>
> Coefficients:
> (Intercept) x1
> 0.29106 0.02845
>
> Sarah
>
> On Mon, Dec 12, 2011 at 11:21 AM, Mintewab Bezabih
> <Mintewab.Bezabih at economics.gu.se> wrote:
>> Dear Paul and Sarah
>>
>> Thanks for the suggestion. I have provided my data here in to make the results reproducable. I am actually trying to do interpoliation of climate data where x1 and x2 are my latitude and longitude and sum64-sum 368 are my rainfall observations which I need to regress against x1 and x2. In the previous I was trying to get my story clear so I did not go into details.
>>
>> Now when I run your suggestion below, I get the following error message. Is there anything in your instruction that I did not get right?
>> many thanks
>> mintewab
>>
>> listOfForumlas = paste(1:300, "~s(x1,x2, k=100)")
>> listofResults = lapply(listOfForumlas, function(f) {
>> b<-gam(as.formula(f),data=dat)
>> vis.gam(b)
>> fitted(b)
>> })
>>
>> Error in model.frame.default(formula = 1 ~ 1 + x1+ x2, data = dat, :
>> variable lengths differ (found for 'x1')
>> ________________________________________
>> Från: Paul Hiemstra [paul.hiemstra at knmi.nl]
>> Skickat: den 12 december 2011 14:42
>> Till: Mintewab Bezabih
>> Kopia: r-help at r-project.org
>> Ämne: Re: [R] shorter way of coding
>>
>> On 12/12/2011 01:16 PM, Mintewab Bezabih wrote:
>>> Dear R users,
>>>
>>> I am using the code below to generate a fitted value of b. I have about 300 different values for for y (y1, y2, ...y300) which means I will have to write the code below 300 times to generate the 300 different fitted values for y. Is there a short way of doing that ?
>>>
>>> Many thanks in advance
>>> Mintewab
>>>
>>> library(mgcv)
>>> dat <- read.table("e:/minti's laptop/C/GBG/allround_survey/rainfallGPS.csv", header=T, sep=",")
>>> b<-gam(y1~s(x1, x2, k=100),data=dat)
>>> vis.gam(b)
>>> fitted(b)
>>> ______________________________________________
>>> R-help at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>
>> Hi Mintewab,
>>
>> Something along these lines should work:
>>
>> listOfForumlas = paste(1:300, "~s(x1, x2, k=100)")
>> listofResults = lapply(listOfForumlas, function(f) {
>> b<-gam(as.formula(f),data=dat)
>> vis.gam(b)
>> fitted(b)
>> })
>>
>> But as Sarah already commented, without a reproducible piece of example
>> code we cannot present any working solutions.
>>
>> cheers,
>> Paul
>>
--
Sarah Goslee
http://www.functionaldiversity.org
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