[R] Generelized Negative Binomial model in R

[Steve Lianoglou]

Hi,

On Wed, Oct 12, 2011 at 11:23 AM, Akram Khaleghei Ghosheh balagh
<a.khaleghei at gmail.com> wrote:
> Hello;
>
> Does anybody knows that R have a function for Generelized Negative Binomial
> model, something like "gnbreg" in "STATA" where dispersion parameter itself
> is a function of covaraites ?

Take a look at the edgeR (and DESeq) package in bioconductor.

edgeR uses a GLMs w/ negative binomial to assess differential
expression of genomic regions using count data (aka next generation
sequencing data).

http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
http://www.bioconductor.org/packages/release/bioc/html/DESeq.html

HTH,
-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact