[R] fitting several lme sistematically

[arun]

Hi Jean,

 Is there something missing in the function?


ids <- a$id
for(i in 2:4){
for(j in 5:7){
        y <- a[, j]
        x <- a[, i]
        model<-lme(y ~ x , random= ~1|ids, na.action="na.exclude")
        }}

 summary(model)
Linear mixed-effects model fit by REML
 Data: NULL 
       AIC      BIC    logLik
  281.1838 291.5236 -136.5919

Random effects:
 Formula: ~1 | ids
        (Intercept)  Residual
StdDev:   0.1109054 0.9251637

Fixed effects: y ~ x 
                  Value  Std.Error DF    t-value p-value
(Intercept)  0.03931479 0.09909825 89  0.3967254  0.6925
x           -0.11826047 0.09731719 89 -1.2152063  0.2275
 Correlation: 
  (Intr)
x 0.056 

Standardized Within-Group Residuals:
       Min         Q1        Med         Q3        Max 
-2.0882452 -0.7718563  0.1156507  0.6119178  1.7986478 

Number of Observations: 100
Number of Groups: 10 

A.K.



----- Original Message -----
From: Jean V Adams <jvadams at usgs.gov>
To: Berta Ibáñez <bertuki6 at hotmail.com>
Cc: Lista de R <r-help at r-project.org>
Sent: Wednesday, July 18, 2012 1:02 PM
Subject: Re: [R] fitting several lme sistematically

I'm not sure why, but lme() doesn't seem to like the variables to be 
referenced as part of a list using [ or $.
Here's an easy workaround ...

ids <- a$id
for(i in 2:4){
for(j in 5:7){
        y <- a[, j]
        x <- a[, i]
        lme(y ~ x , random= ~1|ids, na.action="na.exclude")
        }}

Jean


Berta Ibáñez <bertuki6 at hotmail.com> wrote on 07/18/2012 08:53:51 AM:

> Dear R-list, 
> 
> I have a data set (in the following example called "a") which have: 
> 
> one "subject indicator" variable (called "id")
> three dependent variables (varD, varE, var F)
> three independent variables (varA, varB, varC)
> 
> I want to fit 9 lme models, one per posible combination (DA, DB, DC,
> EA, EB, EC, FA, FB, FC).
> In stead of writting the 9 lme models, I want to do it 
> sistematically (the example is a simplification of what I really 
> have). Here you have the comands for the first model: 
> 
> library(nlme)
> set.seed(50)
> a<-data.frame(array(c(rep(1:10,10), rnorm(600)), c(100,7)))
> names(a)<-c("id", "varA", "varB", "varC", "varD", "varE", "varF")
> lme(varD ~ varA , random= ~1|id,  data=a, na.action="na.exclude")
> 
> I supossed that a simple sintaxis going through the variables of 
> dataset "a" could cope with it: 
> 
> for(i in 2:4){
> for(j in 5:7){
> lme(a[,j] ~ a[,i] , random= ~1|id,  data=a, na.action="na.exclude")
> }}
> 
> but it does not, and the use of eval, as.symbol and so on does not help. 

> 
> for(i in 2:4){
> for(j in 5:7){
> lme(eval(as.symbol(names(a)[j])) ~ eval(as.symbol(names(a)[i]))  , 
> random= ~1|id,  data=a, na.action="na.exclude")
> }}
> 
> Any help??? Thanks a lot in advance!

    [[alternative HTML version deleted]]


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