[R] R bioconductor agilent aCGH analysis

[David Winsemius]

On Jul 27, 2012, at 3:05 PM, Preeti wrote:

> Hi,
>
> I would like to analyze some agilent aCGH copy number files. As a  
> start, I
> would like to normalize this data. I don't know what is the standard  
> way to
> do this. Which package is the standard one that people use for this
> purpose? The chips that I am looking at are the agilent sure print 1M
> (G4447a) array and a custom chip with similar format. My raw data is  
> a text
> file with spot locations and intensities. It is a two color array.

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> Thanks for your help!
>
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-- 

David Winsemius, MD