[R] CRAN (and crantastic) updates this week

[Crantastic]

CRAN (and crantastic) updates this week

New packages
------------

* complex.surv.dat.sim (1.0)
  Maintainer: David Moriña
  Author(s): David Moriña, Centre Tecnològic de Nutrició i Salut and Albert
             Navarro, Universitat Autònoma de Barcelona
  License: GPL (>= 2)
  http://crantastic.org/packages/complex-surv-dat-sim

  Simulation of complex survival data

* EpiEstim (1.0-0)
  Maintainer: Anne Cori
  Author(s): Anne Cori <a.cori at imperial.ac.uk>
  License: GPL (>= 2)
  http://crantastic.org/packages/EpiEstim

  This package provides tools to quantify transmissibility throughout an
  epidemic from the analysis of time series of incidence.

* JMLSD (1.0)
  Maintainer: Emil A. Cornea
  Author(s): Emil A. Cornea, Liddy M. Chen, Bahjat F. Qaqish, Haitao Chu, and
             Joseph G. Ibrahim
  License: GPL-2
  http://crantastic.org/packages/JMLSD

  The package contains a R-function to perform power calculation for
  joint modeling of longitudinal and survival data, with k-th order
  trajectories, when the variance-covariance matrix Sigma_theta is
  unknown.

* mpMap (1.14)
  Maintainer: Emma Huang
  Author(s): Emma Huang
  License: GPL-2
  http://crantastic.org/packages/mpMap

  Tools for constructing linkage maps, reconstructing haplotypes,
  estimating linkage disequilibrium and QTL mapping in multi-parent
  RIL designs (e.g. MAGIC)

* phcfM (1.0)
  Maintainer: Ghislain Vieilledent
  Author(s): Ghislain Vieilledent <ghislain.vieilledent at cirad.fr>
  License: GPL (>= 2)
  http://crantastic.org/packages/phcfM

  A package for modelling anthropogenic deforestation

* qtlnet (1.2.4)
  Maintainer: Brian S. Yandell
  Author(s): Elias Chaibub Neto <echaibub at hotmail.com> and Brian S. yandell
             <yandell at stat.wisc.edu>
  License: GPL (>= 2)
  http://crantastic.org/packages/qtlnet

  Functions to Simultaneously Infer Causal Graphs and Genetic
  Architecture

* R330 (1.0)
  Maintainer: Alan Lee
  Author(s): Alan Lee, Blair Robertson
  License: GPL-2
  http://crantastic.org/packages/R330

  This is a collection of useful functions and data for Stats 330

* RIFS (0.1-5)
  Maintainer: Pavel V. Moskalev
  Author(s): Pavel V. Moskalev, Alexey G. Bukhovets and Tatyana Ya. Biruchinskay
  License: GPL-3
  http://crantastic.org/packages/RIFS

  RIFS package provides functionality for generating & plotting
  prefractals in R^n with various protofractal sets and partition
  coefficient for iterative segments

* rriskDistributions (1.7)
  Maintainer: Federal Institute for Risk Assessment, Matthias Greiner
  Author(s): Natalia Belgorodski (STAT-UP Statistical Consulting, Germany),
             Matthias Greiner (Federal Institute for Risk Assessment,
             Germany), Kristin Tolksdorf (Federal Institute for Risk
             Assessment, Germany), Katharina Schueller (STAT-UP
             Statistical Consulting, Germany)
  License: GPL (>= 3)
  http://crantastic.org/packages/rriskDistributions

  Collection of functions for fitting distributions to given data or by
  known quantiles. Two main functions fit.perc() and fit.cont()
  provide users a GUI that allows to choose a most appropriate
  distribution without any knowledge of the R syntax.

* spclust (1.0)
  Maintainer: Emma Huang
  Author(s): Emma Huang
  License: GPL-2
  http://crantastic.org/packages/spclust

  Selection of subsets of experimental crosses in order to maximize
  genetic diversity

* SteinerNet (1.0)
  Maintainer: Afshin Sadeghi
  Author(s): Afshin Sadeghi, Holger Froehlich
  License: GPL-3
  http://crantastic.org/packages/SteinerNet

  A set of graph functions writen in R to perform steiner tree network
  data analysis on biological pathway data

* Voss (0.1-4)
  Maintainer: Pavel V. Moskalev
  Author(s): Pavel V. Moskalev
  License: GPL-3
  http://crantastic.org/packages/Voss

  Voss package provides functionality for generating realizations of a
  fractal Brownian function on uniform 1D & 2D grid with classic and
  generic versions of the Voss algorithm (random sequential additions)


Updated packages
----------------

AICcmodavg (1.25), anametrix (0.2), arm (1.5-05), bayesDem (1.7-0),
bayesPop (2.0-2), betategarch (1.2), Biograph (2.0.1), bios2mds
(1.2.2), CHCN (1.5), countrycode (0.7), crs (0.15-17), cvplogistic
(2.1-0), deducorrect (1.2-0), DiceOptim (1.3.1), DiceView (1.2-1),
directlabels (2.6), DSL (0.1-2), editrules (2.5-0), faoutlier (0.2.3),
fda.usc (0.9.8), ffbase (0.5), fGarch (2110.80.1), forecast (3.22),
forensim (3.1), gdata (2.10.0), gdata (2.10.5), gplots (2.11.0), gRim
(0.1-9), gWidgetstcltk (0.0-51), gWidgetsWWW (0.0-23), harvestr (0.4),
HMPTrees (1.1), iDEMO (0.2-01), IPMpack (1.2), joineR (1.0-2),
LaplacesDemon (12.06.04), lazyWeave (2.1.4), leiv (2.0-5), markdown
(0.5.1), mc2d (0.1-13), minPtest (1.3), mirt (0.2.5), modelcf (2.1.1),
ModelMap (2.3.2), movMF (0.0-1), MultiPhen (0.6), pacose (1.1),
partykit (0.1-4), pdfCluster (1.0-0), phyclust (0.1-12), pracma
(1.1.0), qvcalc (0.8-8), R2Cuba (1.0-7), rainbow (2.9), relsurv
(2.0-3), rgenoud (5.7-8), RghcnV3 (2.9), RHive (0.0-6), Rmosek
(1.2.3), robustbase (0.9-2), rrlda (1.1), RXKCD (1.7-3), Rz (0.5-0),
Sim.DiffProc (2.5), skmeans (0.2-2), sparkTable (0.9.4), SpatialVx
(0.1-2), SPSL (0.1-6), standGL (1.1), stpp (0.3), timeordered (0.9.1),
TraMineR (1.8-2), TSodbc (2012.5-1), VennDiagram (1.2.1), x12 (1.0-2)



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