[R] DESeq package install error
nac at sanger.ac.uk
Tue Mar 6 11:20:39 CET 2012
HI, I would like to update my DESeq package version on R-2-14 using
bioclite() and get this message, could somebody help please?
Using R version 2.14, BiocInstaller version 1.2.1.
Installing package(s) 'DESeq'
Installing package(s) into ‘/nfs/team82/nac/R-modules’
(as ‘lib’ is unspecified)
Content type 'application/x-gzip' length 1853430 bytes (1.8 Mb)
downloaded 1.8 Mb
* installing *source* package ‘DESeq’ ...
cc -std=gnu99 -I/software/R-2.14.1/lib64/R/include -I/usr/local/include
-fpic -O2 -c pval.c -o pval.o
cc -std=gnu99 -shared -L/usr/local/lib64 -o DESeq.so pval.o
installing to /nfs/team82/nac/R-modules/DESeq/libs
** preparing package for lazy loading
Error in library(pkg, character.only = TRUE, logical.return = TRUE,
lib.loc = lib.loc) :
package ‘locfit’ does not have a NAMESPACE and should be re-installed
ERROR: lazy loading failed for package ‘DESeq’
* removing ‘/nfs/team82/nac/R-modules/DESeq’
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
More information about the R-help