[R] Retrieve hypergeometric results in large scale

Bert Gunter gunter.berton at gene.com
Mon Oct 1 17:23:24 CEST 2012


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-- Bert

On Mon, Oct 1, 2012 at 8:10 AM, Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote:
> Perhaps you should read
>
> ?dhyper
>
> and if you have a hard time parsing that, then read
>
> ?Distributions
>
> and then go back to
>
> ?dhyper
> ---------------------------------------------------------------------------
> Jeff Newmiller                        The     .....       .....  Go Live...
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> Sent from my phone. Please excuse my brevity.
>
> jas4710 <watashi at post.com> wrote:
>
>>
>>I'm going to use
>>
>>dhyper(x, m, n, k)
>>
>>to get a 95% coverage. Let me use an example to explain my problem:
>>
>>Suppose I have a urn containing 90 red and 10 black balls.
>>Now I wanna remove 3 from the urn. By the following codes:
>>
>>m<-90;n<-10;k<-3;
>>x<-0:3
>>dhyper(x,m,n,k)
>>
>>I can obtain the probability that 0,1,2,3 red balls will be removed.
>> 0.000742115 0.025046382 0.247680891 0.726530612
>>
>>So >95% time, 2 to 3 red balls will be removed and the resultant
>>composition
>>will be changed to
>>87:10 or 88:9, the original percent of red balls will be changed from
>>90 to
>>89.69 to 90.72 then.
>>
>>If now I have 50:50 and again to remove 3 balls, I will obtain the
>>probability as:
>>0.1212 0.3788 0.3788 0.1212
>>
>>To get the resultant range of red balls for >95% time, this time all
>>the
>>four cases have to consider and so the resultant change of red balls
>>will
>>become 48.45 to 51.54
>>
>>So my problem is, is there any convenient built-in function that helps
>>extract this 95% confidence interval-like data?
>>
>>
>>
>>
>>
>>
>>--
>>View this message in context:
>>http://r.789695.n4.nabble.com/Retrieve-hypergeometric-results-in-large-scale-tp4644683.html
>>Sent from the R help mailing list archive at Nabble.com.
>>
>>______________________________________________
>>R-help at r-project.org mailing list
>>https://stat.ethz.ch/mailman/listinfo/r-help
>>PLEASE do read the posting guide
>>http://www.R-project.org/posting-guide.html
>>and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.



-- 

Bert Gunter
Genentech Nonclinical Biostatistics

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