[R] kmeans cluster analysis. How do I (1) determine probability of cluster membership (2) determine cluster membership for a new subject
Ranjan Maitra
maitra.mbox.ignored at inbox.com
Tue Oct 2 20:52:50 CEST 2012
On Tue, 2 Oct 2012 14:32:12 -0400 John Sorkin
<jsorkin at grecc.umaryland.edu> wrote:
> Ranjan,
> Thank you for your help. What eludes me is how one computes the distance from each cluster for each subject. For my first subject, datascaled[1,], I have tried to use the following:
> v1 <- sum(fit$centers[1,]*datascaled[1,])
> v2 <- sum(fit$centers[2,]*datascaled[1,])
> v3 <- sum(fit$centers[2,]*datascaled[1,])
> hoping the max(v1,v2,v3) would reproduce the group assignment, i.e. simply assign the subject to the group that gives the largest value, but it does not. How is the distance to the three clusters computed for each subject?
> Thanks,
> John
Well, it should be:
v <- vector(length = 3)
for (i in 1:3)
v[i] <- sum((fit$centers[i, ] - datascaled[1, ])^2)
whichmin(v)
should provide the cluster assignment.
Btw, there is a better, more efficient and automated way to do this,
i.e. avoid the loop using matrices and arrays and apply, but I have not
bothered with that here.
Ranjan
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