[R] Reading labels for very large heatmaps

JIMonroe jim5bm at virginia.edu
Fri Oct 12 04:44:57 CEST 2012


Jean, 
I have attached an example set of data.  The code for reading and
manipulating it before display as a heatmap is as follows:

Apo_Mut<-read.table("Example_Data.txt")
require(cluster)
blah <- agnes(as.matrix(max(Apo_Mut)-Apo_Mut))
blah2<-as.hclust(blah)
LabsDend <- as.dendrogram(blah2)
RowCol<-order.dendrogram(LabsDend)

This should put my previous code into context.  The way the heatmap is
set-up, the labels appear in the graphic, just not when it gets output to
the pdf.  

Thanks, Jacob Example_Data.txt
<http://r.789695.n4.nabble.com/file/n4645953/Example_Data.txt>  



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