[R] Manhattan Plot

Suzen, Mehmet msuzen at gmail.com
Tue Jan 8 20:19:13 CET 2013

Hello Einat,

Have you tried ggbio package's plotGrandLinear from bioconductor?


On 8 January 2013 20:03, Einat Granot <einatgranot at gmail.com> wrote:
> Hello,
> I am trying to create a simple Manhattan plot for a small list of 200 SNPs
> spread out in the genome in  different genes.
> I have tried different functions (using ggplot2 and a function created by
> Stephen Turner, mhtplot etc.)-none of them work smoothly.
> Does anyone have a simple way to create the plot (not for all 22
> chromosomes)- with the x axis showing the genes name and not the chromosomal
> location.
> Thanks a lot,
> Einat
>         [[alternative HTML version deleted]]
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

More information about the R-help mailing list