[R] Manhattan Plot

[Suzen, Mehmet]

Hello Einat,

Have you tried ggbio package's plotGrandLinear from bioconductor?

Best,
-m

On 8 January 2013 20:03, Einat Granot <einatgranot at gmail.com> wrote:
> Hello,
> I am trying to create a simple Manhattan plot for a small list of 200 SNPs
> spread out in the genome in  different genes.
> I have tried different functions (using ggplot2 and a function created by
> Stephen Turner, mhtplot etc.)-none of them work smoothly.
> Does anyone have a simple way to create the plot (not for all 22
> chromosomes)- with the x axis showing the genes name and not the chromosomal
> location.
> Thanks a lot,
> Einat
>
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