[R] Error in mer_finalize(ans) : Downdated X'X is not positive definite, 8.
Yoav Avneon
Avneony at bgu.ac.il
Fri Jan 18 22:11:25 CET 2013
Dear All,
I have conducted an experiment in order to examine predation pressure in the
surroundings of potential wildlife road-crossing structures. I have
documented predation occurrence (binary…) in these structures and calculated
several possible explanatory variables describing the spatial heterogeneity
in several scales. At the landscape scale I have calculated the percentage
of different land-uses (7) in buffers around the structures with changing
radii (100m, 250m, 500m, 1000m and 2000m). For each radii I have generated
a set of all possible models from the given 7 variables related to this
radii.
I have tried to account for random effects. A spatial random effect – the
structure itself as a repeated measurement, by adding the term
(1|Road_Structure). A temporal random effect – the observation session (is
it correct to say that this examines possible learning in time ?), by adding
the term (1|Session.ord).
I have generated 4 sets for each radii: 1) with both random effects, 2+3)
only one (each) random effect, and 4) none.
I have tried to model the relationships using glm, glmer and lmer.
The problem is that in the full model (all 7 variables) of some sets with
random effects I get the following error:
*Error in mer_finalize(ans) : Downdated X'X is not positive definite, 8.*
The only record of this error I have found in the internet is for data with
missing observation. This doesn't comply with my data set. I think it
might be a singularity problem but I don't know how to check it, and as a
result, I obviously don't know how to fix it.
I have attached example R scripts (for the radius 2000) and the data table.
Any help is highly appreciated !
Thanks and all the best,
--
Yoav Avneon
Department of Life Sciences
The Spatial Ecology Lab
Ben Gurion University of the Negev
P.O.B. 653 Beer-Sheva 84105
ISRAEL
+972-52-3391918 (mobile)
+972-8-6461350 (lab)
-------------------------------------------------------------------------------------------------------------------------------------------
Yoav Yeled Teva
ANP_multi_landscape_No_RE_Buffer_2000m.R
<http://r.789695.n4.nabble.com/file/n4656015/ANP_multi_landscape_No_RE_Buffer_2000m.R>
ANP_multi_landscape_Plus_RE_Str_Session_Buffer_2000m.R
<http://r.789695.n4.nabble.com/file/n4656015/ANP_multi_landscape_Plus_RE_Str_Session_Buffer_2000m.R>
ANP_multi_landscape_Plus_RE_Str_Buffer_2000m.R
<http://r.789695.n4.nabble.com/file/n4656015/ANP_multi_landscape_Plus_RE_Str_Buffer_2000m.R>
ANP_multi_landscape_Plus_RE_Session_Buffer_2000m.R
<http://r.789695.n4.nabble.com/file/n4656015/ANP_multi_landscape_Plus_RE_Session_Buffer_2000m.R>
Raw_data_4_logit_reg_Only_str_point_all_Landscape_vars.txt
<http://r.789695.n4.nabble.com/file/n4656015/Raw_data_4_logit_reg_Only_str_point_all_Landscape_vars.txt>
--
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